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GeneNamesComparison_oldAndNewTokenBlacklists.py
GeneNamesComparison_oldAndNewTokenBlacklists.py
 
 
README.md
README.md
 
 
ReferenceFilteredByBlacklist.py
ReferenceFilteredByBlacklist.py
 
 
Sprot_Tair_Blumeria_ReferenceFilteredByBlacklist.py
Sprot_Tair_Blumeria_ReferenceFilteredByBlacklist.py
 
 
ahrdQuickComparison.py
ahrdQuickComparison.py
 
 
ahrdResult.py
ahrdResult.py
 
 
ahrdResultComparisonForBlacklists.py
ahrdResultComparisonForBlacklists.py
 
 
ahrdResultOnBlumeria.py
ahrdResultOnBlumeria.py
 
 
ahrdResultOnFilteredAndIncblacklist.py
ahrdResultOnFilteredAndIncblacklist.py
 
 
ahrdResultOnSprot1_2_4.py
ahrdResultOnSprot1_2_4.py
 
 
ahrdResultOnSprot3.py
ahrdResultOnSprot3.py
 
 
ahrdResultOnSprotClstrd.py
ahrdResultOnSprotClstrd.py
 
 
ahrdResultOnTair1and2.py
ahrdResultOnTair1and2.py
 
 
ahrdResultOnfilteredReference3.py
ahrdResultOnfilteredReference3.py
 
 
ahrdResult_nrSprotExpGOAv2_against_myDB.py
ahrdResult_nrSprotExpGOAv2_against_myDB.py
 
 
ahrdWithCombinedTokenOnData3.py
ahrdWithCombinedTokenOnData3.py
 
 
betterPerformed_3.py
betterPerformed_3.py
 
 
betterPerformed_4.py
betterPerformed_4.py
 
 
betterPerformed_filteredReference3.py
betterPerformed_filteredReference3.py
 
 
blacklistsComp.py
blacklistsComp.py
 
 
clusterDescriptions.py
clusterDescriptions.py
 
 
clusterDescriptions_70.py
clusterDescriptions_70.py
 
 
compareTairSelectedDescriptionsUsingNewTairDesclineBlacklist.py
compareTairSelectedDescriptionsUsingNewTairDesclineBlacklist.py
 
 
eggNOGsearch.py
eggNOGsearch.py
 
 
extract1034SeqsFastaFile.py
extract1034SeqsFastaFile.py
 
 
extractClustersDescriptions.py
extractClustersDescriptions.py
 
 
extractEggnogDescription.py
extractEggnogDescription.py
 
 
extractRepresentativeDescription.py
extractRepresentativeDescription.py
 
 
extractRepresentativeDescription_eggnogVersion.py
extractRepresentativeDescription_eggnogVersion.py
 
 
filterEggnogClustersDescriptions.py
filterEggnogClustersDescriptions.py
 
 
filterReferenceForFlo.py
filterReferenceForFlo.py
 
 
filterReference_NewBlacklist.py
filterReference_NewBlacklist.py
 
 
filterTAIRdatabaseForBatch2.py
filterTAIRdatabaseForBatch2.py
 
 
findGNsIndescriptions.py
findGNsIndescriptions.py
 
 
findNewTairBlacklistTokensInAHRDselectedDescriptions.py
findNewTairBlacklistTokensInAHRDselectedDescriptions.py
 
 
generateClusteredReference.py
generateClusteredReference.py
 
 
generateCompetitors.py
generateCompetitors.py
 
 
generateEggnogRepresentativeSeqs.py
generateEggnogRepresentativeSeqs.py
 
 
generateEggnogSprotRepresentativeSeqs.py
generateEggnogSprotRepresentativeSeqs.py
 
 
preClustering.py
preClustering.py
 
 
prepareDBs.py
prepareDBs.py
 
 
referenceExtractionFromTairDB.py
referenceExtractionFromTairDB.py
 
 
removeGNfromDBs.py
removeGNfromDBs.py
 
 
smallSelectionOfTrembl.py
smallSelectionOfTrembl.py
 
 
sprotGNfromUniprot.py
sprotGNfromUniprot.py
 
 
sprot_tair_blumeria_filtered_reference_generated.py
sprot_tair_blumeria_filtered_reference_generated.py
 
 
suffixtreeLibrary.py
suffixtreeLibrary.py
 
 
temporary.py
temporary.py
 
 
unknownProteinExtraction.py
unknownProteinExtraction.py
 
 
unknownProteinExtractionfromFilteredReference.py
unknownProteinExtractionfromFilteredReference.py
 
 
wordsCountExtractionFromDbs.py
wordsCountExtractionFromDbs.py
 
 
wordsExtractionTest.py
wordsExtractionTest.py
 
 
wordsExtractionTest_sprot.py
wordsExtractionTest_sprot.py
 
 
wordsExtractionTest_tair.py
wordsExtractionTest_tair.py
 
 
wordsExtractionTest_trembl.py
wordsExtractionTest_trembl.py
 
 

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blacklistsTest

The experiments on the AHRD (Automated Assignment of Human Readable Descriptions)

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