Add scXpand

[ofirshorer]

Dear scverse team,
Please find below the complete checklist regarding adding our new package to your ecosystem: scXpand.
Thank you very much!
Ofir

Name of the tool: scXpand

Short description: scXpand is a machine learning framework for pan-cancer detection of T-cell clonal expansion directly from single-cell RNA sequencing (scRNA-seq), without paired T-cell receptor (TCR) sequencing.

How does the package use scverse data structures (please describe in a few sentences): Our package is fully compatible with AnnData as the standard data structure, and uses Scanpy and Scirpy as part of the data preparation procedures and downstream analysis.

• The code is publicly available under an OSI-approved license
• The package provides versioned releases
• The package can be installed from a standard registry (e.g. PyPI, conda-forge, bioconda)
• Automated tests cover essential functions of the package and a reasonable range of inputs and conditions
• Continuous integration (CI) automatically executes these tests on each push or pull request
• The package provides API documentation via a website or README
• The package uses scverse datastructures where appropriate (i.e. AnnData, MuData or SpatialData and their modality-specific extensions)
• I am an author or maintainer of the tool and agree on listing the package on the scverse website

Recommended

• Please announce this package on scverse communication channels (zulip, discourse, twitter)

• Please tag the author(s) these announcements. Handles (e.g. @scverse_team) to include are:

Zulip:
Discourse:
Mastodon:
Bluesky:
Twitter: @OfirShorer, @RonAmit5, @YizhakLab

• The package provides tutorials (or "vignettes") that help getting users started quickly
• The package uses the scverse cookiecutter template

[flying-sheep]

Hi, looks good! It doesn’t look like CI is actually enabled though, or am I missing something?

https://github.com/yizhak-lab-ccg/scXpand/actions/workflows/test.yml/badge.svg

[flying-sheep]

looks great, thank you!

[ofirshorer]

Thank you very much Philipp for your fast responses!
Have a great day,
Ofir

[flying-sheep]

you too!