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Add anndataR#302

Merged
grst merged 4 commits intoscverse:mainfrom
lazappi:add-anndataR
Nov 19, 2025
Merged

Add anndataR#302
grst merged 4 commits intoscverse:mainfrom
lazappi:add-anndataR

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@lazappi
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@lazappi lazappi commented Nov 19, 2025

Name of the tool: anndataR

Short description: An R implementation of the AnnData object including native reading and writing of H5AD files and conversion to common R data structures.

Requires #301

How does the package use scverse data structures (please describe in a few sentences): Implements AnnData in R and provides interoperability with Python

  • The code is publicly available under an OSI-approved license
  • The package provides versioned releases
  • The package can be installed from a standard registry (e.g. PyPI, conda-forge, bioconda)
  • Automated tests cover essential functions of the package and a reasonable range of inputs and conditions
  • Continuous integration (CI) automatically executes these tests on each push or pull request
  • The package provides API documentation via a website or README
  • The package uses scverse datastructures where appropriate (i.e. AnnData, MuData or SpatialData and their modality-specific extensions)
  • I am an author or maintainer of the tool and agree on listing the package on the scverse website

Recommended

  • Please announce this package on scverse communication channels (zulip, discourse, twitter)

  • Please tag the author(s) these announcements. Handles (e.g. @scverse_team) to include are:

    • Zulip: @**Luke Zappia**, @**Robrecht Cannoodt**, @**Louise Deconinck**
    • Mastodon: @lazappi@mastodon.au
    • Bluesky: @lazappi@bsky.social, @rcannood.bsky.socal, @louisedck.bsky.social
  • The package provides tutorials (or "vignettes") that help getting users started quickly

  • The package uses the scverse cookiecutter template.

@lazappi
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lazappi commented Nov 19, 2025

I guess the logo field is not used, or should the file go somewhere else?

@grst grst merged commit 4a66b19 into scverse:main Nov 19, 2025
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grst commented Nov 19, 2025

This was just an outdated pre-commit config.
The logo is currently not used, but the location was correct.

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2 participants