scverse · flying-sheep · Nov 20, 2025 · Nov 20, 2025
diff --git a/packages/CellAnnotator/meta.yaml b/packages/CellAnnotator/meta.yaml
@@ -16,3 +16,4 @@ version: v0.1.3
 contact:
   - Marius1311
 test_command: pip install -e '.[test]' && pytest
+category: ecosystem
diff --git a/packages/CellCharter/meta.yaml b/packages/CellCharter/meta.yaml
@@ -19,3 +19,4 @@ contact:
   - marcovarrone
 test_command: |
   pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/CellMapper/meta.yaml b/packages/CellMapper/meta.yaml
@@ -15,3 +15,4 @@ version: v0.1.2
 contact:
   - Marius1311
 test_command: pip install -e '.[test]' && pytest
+category: ecosystem
diff --git a/packages/CellOracle/meta.yaml b/packages/CellOracle/meta.yaml
@@ -42,3 +42,4 @@ test_command: |
   pip install .
   # command to run tests
   pytest -v
+category: ecosystem
diff --git a/packages/CellRank/meta.yaml b/packages/CellRank/meta.yaml
@@ -23,3 +23,4 @@ contact:
   - WeilerP
 test_command: |
   pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/Cell_BLAST/meta.yaml b/packages/Cell_BLAST/meta.yaml
@@ -17,3 +17,4 @@ test_command: |
   pip install --upgrade pip flit
   flit install -s
   cd test && python test.py
+category: ecosystem
diff --git a/packages/CellphoneDB/meta.yaml b/packages/CellphoneDB/meta.yaml
@@ -31,3 +31,4 @@ contact:
   - zktuong
 test_command: |
   git clone git@github.com:ventolab/CellphoneDB.git && pip install cellphonedb && pip install pytest && cd CellphoneDB/cellphonedb/src/tests/ && python3 -m pytest method_tests.py
+category: ecosystem
diff --git a/packages/Cirrocumulus/meta.yaml b/packages/Cirrocumulus/meta.yaml
@@ -18,3 +18,4 @@ contact:
   - gouwens
 test_command: |
   SETUPTOOLS_SCM_PRETEND_VERSION=0.0.1 pip install .[test,parquet] && pytest
+category: ecosystem
diff --git a/packages/DoubletDetection/meta.yaml b/packages/DoubletDetection/meta.yaml
@@ -18,3 +18,4 @@ contact:
   - JonathanShor
   - ambrosejcarr
 test_command: pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/GPTBioInsightor/meta.yaml b/packages/GPTBioInsightor/meta.yaml
@@ -16,3 +16,4 @@ version: v0.3.0
 contact:
   - huangsh
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/GRnnData/meta.yaml b/packages/GRnnData/meta.yaml
@@ -19,3 +19,4 @@ version: v1.1.4
 contact:
   - jkobject
 test_command: pip install . && make test
+category: ecosystem
diff --git a/packages/LazySlide/meta.yaml b/packages/LazySlide/meta.yaml
@@ -16,3 +16,4 @@ contact:
   - eabila
   - afrendeiro
 test_command: uv run task test
+category: ecosystem
diff --git a/packages/Mowgli/meta.yaml b/packages/Mowgli/meta.yaml
@@ -18,3 +18,4 @@ version: v0.2.0
 contact:
   - gjhuizing
 test_command: pip install . && pytest
+category: ecosystem
diff --git a/packages/Multivelo/meta.yaml b/packages/Multivelo/meta.yaml
@@ -17,3 +17,4 @@ contact:
   - jw156605
   - danielee0707
   - jacobrepucci
+category: ecosystem
diff --git a/packages/PEAKQC/meta.yaml b/packages/PEAKQC/meta.yaml
@@ -16,3 +16,4 @@ contact:
   - jan1034
   - mlooso
 test_command: pip install . && pytest
+category: ecosystem
diff --git a/packages/PILOT/meta.yaml b/packages/PILOT/meta.yaml
@@ -33,3 +33,4 @@ test_command: |
   pip install pilotpy
   conda install pytest
   cd test && pytest test_pilot.py
+category: ecosystem
diff --git a/packages/ParTIpy/meta.yaml b/packages/ParTIpy/meta.yaml
@@ -16,3 +16,4 @@ version: v0.0.04
 contact:
   - psl-schaefer
   - leotenshii
+category: ecosystem
diff --git a/packages/PathML/meta.yaml b/packages/PathML/meta.yaml
@@ -24,3 +24,4 @@ contact:
   - Yu-AnChen
   - jzhang1031
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/PyDESeq2/meta.yaml b/packages/PyDESeq2/meta.yaml
@@ -20,3 +20,4 @@ contact:
   - vcabeli
 test_command: |
   pip install ."[dev]" && pytest
+category: ecosystem
diff --git a/packages/Rectangle/meta.yaml b/packages/Rectangle/meta.yaml
@@ -16,3 +16,4 @@ contact:
   - bernheder
 test_command: |
   pip install ."[dev,test]" && pytest
+category: ecosystem
diff --git a/packages/SC2Spa/meta.yaml b/packages/SC2Spa/meta.yaml
@@ -20,3 +20,4 @@ version: v1.2
 contact:
   - linbuliao
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/SCALEX/meta.yaml b/packages/SCALEX/meta.yaml
@@ -17,3 +17,4 @@ version: v1.0.3
 contact:
   - jsxlei
 test_command: pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/STMiner/meta.yaml b/packages/STMiner/meta.yaml
@@ -15,3 +15,4 @@ version: v1.1.0
 contact:
   - PSSUN
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/anndata-for-R/meta.yaml b/packages/anndata-for-R/meta.yaml
@@ -11,3 +11,4 @@ license: MIT
 version: 0.7.5.5
 contact:
   - rcannood
+category: ecosystem
diff --git a/packages/anndataR/meta.yaml b/packages/anndataR/meta.yaml
@@ -21,3 +21,4 @@ contact:
   - rcannood
   - LouiseDck
 logo: logo.svg
+category: ecosystem
diff --git a/packages/annsel/meta.yaml b/packages/annsel/meta.yaml
@@ -18,3 +18,4 @@ tags:
   - utilities
 test_command: |
   pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/benGRN/meta.yaml b/packages/benGRN/meta.yaml
@@ -18,3 +18,4 @@ version: v1.2.1
 contact:
   - jkobject
 test_command: pip install . && make test
+category: ecosystem
diff --git a/packages/bento-tools/meta.yaml b/packages/bento-tools/meta.yaml
@@ -16,3 +16,4 @@ contact:
   - ckmah
   - noor01
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/biolord/meta.yaml b/packages/biolord/meta.yaml
@@ -16,3 +16,4 @@ contact:
   - zoepiran
 test_command: |
   pip install ".[dev,test]" && pytest
+category: ecosystem
diff --git a/packages/cell2location/meta.yaml b/packages/cell2location/meta.yaml
@@ -22,3 +22,4 @@ contact:
   - emdann
 test_command: |
   pip install ".[dev]" && pytest
+category: ecosystem
diff --git a/packages/cellxgene/meta.yaml b/packages/cellxgene/meta.yaml
@@ -27,3 +27,4 @@ contact:
   - mweiden
 test_command: |
   pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/dandelion/meta.yaml b/packages/dandelion/meta.yaml
@@ -25,3 +25,4 @@ contact:
   - grst
 test_command: |
   pip install "." && pytest
+category: ecosystem
diff --git a/packages/delnx/meta.yaml b/packages/delnx/meta.yaml
@@ -18,3 +18,4 @@ contact:
   - adaml9
 test_command: |
   pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/dynamo-release/meta.yaml b/packages/dynamo-release/meta.yaml
@@ -19,3 +19,4 @@ contact:
   - dummyindex
   - yaz62
 test_command: pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/epiScanpy/meta.yaml b/packages/epiScanpy/meta.yaml
@@ -24,3 +24,4 @@ contact:
   - michalk8
   - mvinyard
 test_command: pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/eschr/meta.yaml b/packages/eschr/meta.yaml
@@ -18,3 +18,4 @@ version: v1.0.1
 contact:
   - smgoggin10
 test_command: pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/favapy/meta.yaml b/packages/favapy/meta.yaml
@@ -18,3 +18,4 @@ license: MIT
 version: v0.3.9.4
 contact:
   - mikelkou
+category: ecosystem
diff --git a/packages/flowsom/meta.yaml b/packages/flowsom/meta.yaml
@@ -25,3 +25,4 @@ contact:
   - ysaeys
   - SofieVG
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/gssnng/meta.yaml b/packages/gssnng/meta.yaml
@@ -21,3 +21,4 @@ contact:
   - redst4r
 test_command: |
   git clone git@github.com:IlyaLab/gssnng.git && pip install gssnng && pip install pytest && cd gssnng/ && pytest
+category: ecosystem
diff --git a/packages/hotspot/meta.yaml b/packages/hotspot/meta.yaml
@@ -17,3 +17,4 @@ contact:
   - adamgayoso
 test_command: |
   pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/infercnvpy/meta.yaml b/packages/infercnvpy/meta.yaml
@@ -14,3 +14,4 @@ contact:
   - grst
 test_command: |
   pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/liana/meta.yaml b/packages/liana/meta.yaml
@@ -19,3 +19,4 @@ test_command: |
   pip install poetry && \
   poetry install --extras "full" && \
   poetry run pytest --disable-warnings .
+category: ecosystem
diff --git a/packages/maxspin/meta.yaml b/packages/maxspin/meta.yaml
@@ -16,3 +16,4 @@ version: v0.1.1
 contact:
   - dcjones
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/moscot/meta.yaml b/packages/moscot/meta.yaml
@@ -21,3 +21,4 @@ contact:
   - Marius1311
   - zoepiran
 test_command: pip install -e '.[dev]' && pytest
+category: ecosystem
diff --git a/packages/novae/meta.yaml b/packages/novae/meta.yaml
@@ -18,3 +18,4 @@ version: v0.2.1
 contact:
   - quentinblampey
 test_command: pip install ".[dev]" && pytest
+category: ecosystem
diff --git a/packages/omicverse/meta.yaml b/packages/omicverse/meta.yaml
@@ -21,3 +21,4 @@ contact:
   - DBinary
   - JuliaMYQ
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/palantir/meta.yaml b/packages/palantir/meta.yaml
@@ -30,3 +30,4 @@ contact:
   - ManuSetty
   - katosh
 test_command: pip install -e '.' && pip install flake8 pytest coverage typing-extensions && pytest
+category: ecosystem
diff --git a/packages/panpipes/meta.yaml b/packages/panpipes/meta.yaml
@@ -28,3 +28,4 @@ contact:
   - Zethson
   - wlason
 test_command: pip install -e '.[dev]' && pytest
+category: ecosystem
diff --git a/packages/pegasus/meta.yaml b/packages/pegasus/meta.yaml
@@ -24,3 +24,4 @@ contact:
   - slowkow
   - jlchang
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/popV/meta.yaml b/packages/popV/meta.yaml
@@ -14,3 +14,4 @@ version: v0.5.2
 contact:
   - canergen
 test_command: pip install -e '.[test]' && pytest
+category: ecosystem
diff --git a/packages/pyLemur/meta.yaml b/packages/pyLemur/meta.yaml
@@ -17,3 +17,4 @@ version: v0.1.0
 contact:
   - const-ae
 test_command: pip install -e '.[dev]' && pytest
+category: ecosystem
diff --git a/packages/pySCENIC/meta.yaml b/packages/pySCENIC/meta.yaml
@@ -29,3 +29,4 @@ contact:
   - simonvh
   - loremendez
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/pyUCell/meta.yaml b/packages/pyUCell/meta.yaml
@@ -23,3 +23,4 @@ contact:
   - mass-a
   - sjcarmona
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/pychromVAR/meta.yaml b/packages/pychromVAR/meta.yaml
@@ -15,3 +15,4 @@ contact:
   - lzj1769
 test_command: |
   test_command: pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/pytximport/meta.yaml b/packages/pytximport/meta.yaml
@@ -18,3 +18,4 @@ test_command: |
   pip install flit poetry && \
   flit install --deps all && \
   coverage run -m pytest
+category: ecosystem
diff --git a/packages/scCellFie/meta.yaml b/packages/scCellFie/meta.yaml
@@ -21,3 +21,4 @@ test_command: |
   python -m pip install -r requirements.txt
   python -m pip install -e .
   pytest -vv --cov --cov-report xml
+category: ecosystem
diff --git a/packages/scDataLoader/meta.yaml b/packages/scDataLoader/meta.yaml
@@ -22,3 +22,4 @@ version: v1.2.2
 contact:
   - jkobject
 test_command: pip install . && make test
+category: ecosystem
diff --git a/packages/scFates/meta.yaml b/packages/scFates/meta.yaml
@@ -24,3 +24,4 @@ test_command: |
   pip install rpy2==3.4.2
   pip install .
   pytest scFates/tests/test_w_plots.py
+category: ecosystem
diff --git a/packages/scGen/meta.yaml b/packages/scGen/meta.yaml
@@ -24,3 +24,4 @@ contact:
   - alirezaomidi
   - mumichae
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/scLiTr/meta.yaml b/packages/scLiTr/meta.yaml
@@ -17,3 +17,4 @@ contact:
   - serjisa
 test_command: |
   pip install . && pytest
+category: ecosystem
diff --git a/packages/scPRINT/meta.yaml b/packages/scPRINT/meta.yaml
@@ -24,3 +24,4 @@ version: v1.6.2
 contact:
   - jkobject
 test_command: pip install . && make test
+category: ecosystem
diff --git a/packages/scXpand/meta.yaml b/packages/scXpand/meta.yaml
@@ -23,3 +23,4 @@ contact:
   - yizhak-lab-ccg
 test_command: |
   pip install -e ".[dev]" && pytest --cov=src.scxpand tests
+category: ecosystem
diff --git a/packages/scanpro/meta.yaml b/packages/scanpro/meta.yaml
@@ -17,3 +17,4 @@ contact:
   - yalayoubi
   - mlooso
 test_command: pip install . && pytest
+category: ecosystem
diff --git a/packages/schist/meta.yaml b/packages/schist/meta.yaml
@@ -17,3 +17,4 @@ contact:
   - leomorelli
 test_command: |
   pytest conftest.py
+category: ecosystem
diff --git a/packages/scib/meta.yaml b/packages/scib/meta.yaml
@@ -19,3 +19,4 @@ contact:
   - danielStrobl
   - mbuttner
 test_command: pip install ".[test,rpy2,harmony,scvi,scanorama]" && pytest
+category: ecosystem
diff --git a/packages/scmcp/meta.yaml b/packages/scmcp/meta.yaml
@@ -14,3 +14,4 @@ version: v0.2.2
 contact:
   - huangsh
 test_command: uv run --no-sync pytest
+category: ecosystem
diff --git a/packages/sctriangulate/meta.yaml b/packages/sctriangulate/meta.yaml
@@ -15,3 +15,4 @@ version: v0.12.0
 contact:
   - frankligy
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/scvelo/meta.yaml b/packages/scvelo/meta.yaml
@@ -15,3 +15,4 @@ contact:
   - WeilerP
   - VolkerBergen
 test_command: pip install -e '.[dev]' && pytest
+category: ecosystem
diff --git a/packages/scxmatch/meta.yaml b/packages/scxmatch/meta.yaml
@@ -24,3 +24,4 @@ contact:
   - dbblumenthal
 test_command: |
   conda install scxmatch -c conda-forge -c bioconda && git clone https://github.com/bionetslab/scxmatch.git && cd scxmatch/tests/ && python test_mwe.py
+category: ecosystem
diff --git a/packages/scyan/meta.yaml b/packages/scyan/meta.yaml
@@ -20,3 +20,4 @@ version: v1.5.0
 contact:
   - quentinblampey
 test_command: pip install ".[dev]" && pytest
+category: ecosystem
diff --git a/packages/sfaira/meta.yaml b/packages/sfaira/meta.yaml
@@ -27,3 +27,4 @@ contact:
   - giovp
   - Wang-Cankun
 test_command: null
+category: ecosystem
diff --git a/packages/sift-sc/meta.yaml b/packages/sift-sc/meta.yaml
@@ -17,3 +17,4 @@ contact:
   - zoepiran
 test_command: |
   pip install ".[test]" && pytest
+category: ecosystem
diff --git a/packages/sobolev-alignment/meta.yaml b/packages/sobolev-alignment/meta.yaml
@@ -20,3 +20,4 @@ contact:
   - saroudant
 test_command: |
   pip install ."[dev]" && pytest
+category: ecosystem
diff --git a/packages/sopa/meta.yaml b/packages/sopa/meta.yaml
@@ -20,3 +20,4 @@ version: v1.0.0
 contact:
   - quentinblampey
 test_command: pip install ".[dev,cellpose]" && pytest
+category: ecosystem
diff --git a/packages/spatial-eggplant/meta.yaml b/packages/spatial-eggplant/meta.yaml
@@ -16,3 +16,4 @@ version: v0.2.3
 contact:
   - almaan
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/spatialproteomics/meta.yaml b/packages/spatialproteomics/meta.yaml
@@ -20,3 +20,4 @@ contact:
   - MeyerBender
   - sagar87
 test_command: pip install ".[all,dev]" && pytest
+category: ecosystem
diff --git a/packages/spatiomic/meta.yaml b/packages/spatiomic/meta.yaml
@@ -18,3 +18,4 @@ version: v0.5.0
 contact:
   - maltekuehl
 test_command: uv run pytest -m "not gpu"
+category: ecosystem
diff --git a/packages/symphonypy/meta.yaml b/packages/symphonypy/meta.yaml
@@ -15,3 +15,4 @@ contact:
   - potulabe
 test_command: |
   pip install . && pytest
+category: ecosystem
diff --git a/packages/tangram/meta.yaml b/packages/tangram/meta.yaml
@@ -20,3 +20,4 @@ contact:
   - gaddamshreya
   - hejinhuang
 test_command: pip install "." && pytest
+category: ecosystem
diff --git a/packages/vitessce/meta.yaml b/packages/vitessce/meta.yaml
@@ -32,3 +32,4 @@ contact:
   - romanhaa
   - will-moore
 test_command: pip install "." && pytest
+category: ecosystem
-Original file line number
+Diff line change
@@ Expand Up / @@ -16,3 +16,4 @@ contact: @@
       - jan1034
       - mlooso
     test_command: pip install . && pytest
+    category: ecosystem