Justen, L. et al. Deep untargated wastewater metagenomic sequencing from sewersheds across the United States. medRxiv 2026.03.05.26345726 (2026) doi:10.64898/2026.03.05.26345726
data/— Processed datasets (kraken summaries, relative abundances, virus hits, QC stats, wastewater PCR and clinical comparisons, PMMoV qPCR)code/— Plotting scripts and data loaders used to generate manuscript figuresfigures/— Manuscript figurestables/— Main text and supplementary tables (sampling sites, sequencing costs, correlation tables, literature review)
Wastewater PCR data used for validation are publicly available through the CDC NWSS data portal: SARS-CoV-2 (dataset j9g8-acpt), Influenza A (dataset ymmh-divb), and RSV (dataset 45cq-cw4i). A subset of these data were generated by WastewaterSCAN (Boehm et al. 2024, 2026) and are shared under a CC BY-NC 4.0 license; see https://data.wastewaterscan.org/about for terms of use.