2246 create inputs tab in spreadsheet

app/controllers/single_pages_controller.rb

@@ -65,30 +65,8 @@ def download_samples_excel
     raise "Could not retrieve #{assay_id.nil? ? 'Study' : 'Assay'} Sample Type! Do you have at least viewing permissions?" unless @sample_type.can_view?
 
     @template = Template.find(@sample_type.template_id)
-
-    sample_attributes = @sample_type.sample_attributes.map do |sa|
-      is_cv_list = sa.sample_attribute_type.base_type == Seek::Samples::BaseType::CV_LIST
-      obj = if sa.sample_controlled_vocab_id.nil?
-              { sa_cv_title: sa.title, sa_cv_id: nil }
-            else
-              { sa_cv_title: sa.title, sa_cv_id: sa.sample_controlled_vocab_id, allows_custom_input: sa.allow_cv_free_text }
-            end
-      obj.merge({ required: sa.required, is_cv_list: })
-    end
-
-    @sa_cv_terms = [{ name: 'id', has_cv: false, data: nil, allows_custom_input: nil, required: nil, is_cv_list: nil },
-                    { name: 'uuid', has_cv: false, data: nil, allows_custom_input: nil, required: nil, is_cv_list: nil }]
-
-    sample_attributes.map do |sa|
-      if sa[:sa_cv_id].nil?
-        @sa_cv_terms.push({ name: sa[:sa_cv_title], has_cv: false, data: nil,
-                            allows_custom_input: nil, required: sa[:required], is_cv_list: nil })
-      else
-        sa_terms = SampleControlledVocabTerm.where(sample_controlled_vocab_id: sa[:sa_cv_id]).map(&:label)
-        @sa_cv_terms.push({ name: sa[:sa_cv_title], has_cv: true, data: sa_terms,
-                            allows_custom_input: sa[:allows_custom_input], required: sa[:required], is_cv_list: sa[:is_cv_list] })
-      end
-    end
+
+    spreadsheet_name = @sample_type.title&.concat(".xlsx")
 
     spreadsheet_name = @sample_type.title&.concat(".xlsx")
 

app/helpers/single_pages_helper.rb

@@ -0,0 +1,74 @@
+module SinglePagesHelper
+  ## Function to get a fixed size matrix
+  def transposed_filled_arrays(arrays)
+    raise 'Input is no array' unless arrays.is_a?(Array)
+
+    size = 0
+    arrays.map { |array| size = array.size if array.size > size }
+
+    filled_arrays = []
+    arrays.map { |array| filled_arrays.push(Array.new(size) { |i| array[i] }) }
+
+    filled_arrays.transpose
+  end
+
+  ATTRIBUTES_WITH_DATA_VALIDATION = [
+    Seek::Samples::BaseType::CV,
+    Seek::Samples::BaseType::SEEK_SAMPLE,
+    Seek::Samples::BaseType::SEEK_DATA_FILE,
+    Seek::Samples::BaseType::SEEK_STRAIN,
+    Seek::Samples::BaseType::SEEK_SOP,
+  ]
+
+  def requires_data_validation?(sample_attribute)
+    ATTRIBUTES_WITH_DATA_VALIDATION.include?(sample_attribute.sample_attribute_type.base_type)
+  end
+
+  def get_values_for_attribute(attribute)
+    type = attribute.sample_attribute_type
+    if type.controlled_vocab?
+      get_values_for_cv(attribute)
+    elsif type.seek_sample? || type.seek_sample_multi?
+      get_values_for_registered_samples(attribute)
+    elsif type.seek_data_file?
+      get_values_for_datafiles(attribute)
+    elsif type.seek_strain?
+      get_values_for_strains(attribute)
+    elsif type.seek_sop?
+      get_values_for_sops(attribute)
+    else
+      []
+    end
+  end
+
+  def get_values_for_cv(sample_attribute)
+    sample_attribute.sample_controlled_vocab.labels
+  end
+
+  def get_values_for_registered_samples(sample_attribute)
+    sample_attribute.linked_sample_type.samples.map do |sample|
+      { id: sample.id, type: 'Sample', title: sample.title }
+    end
+  end
+
+  def get_values_for_sops(sample_attribute)
+    is_assay_attribute = sample_attribute.sample_type.assays.any?
+    if is_assay_attribute
+      sops = sample_attribute.sample_type.assays.first.sops
+    else
+      sops = sample_attribute.sample_type.studies.first.sops
+    end
+
+    sops.map { |sop| { id: sop.id, type: 'Sop', title: sop.title } }
+  end
+
+  def get_values_for_datafiles(sample_attribute)
+    data_files = sample_attribute.sample_type.projects.first.data_files
+    data_files.map { |data_file| { id: data_file.id, type: 'DataFile', title: data_file.title } }
+  end
+
+  def get_values_for_strains(sample_attribute)
+    strains = sample_attribute.sample_type.projects.first.strains
+    strains.map { |strain| { id: strain.id, type: 'Strain', title: strain.title } }
+  end
+end