Update PubMed seed-bank notebook and add batch processing capabilities to almanack

[willdavidson05]

Description

This PR is using the same PubMed Data utilized in the Software Entropy analysis, but applying it to the current Almanack metrics and checks

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• Bug fix (fixes an issue).
• Enhancement (adds functionality).
• Breaking change (these changes would cause existing functionality to not work as expected).

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[d33bs]

Nice job @willdavidson05 ! I left a few comments up for your discretion but overall felt this was looking good.

Once you settle on the code within the data module consider adding tests for the new functions to ensure coverage is retained. Additionally, it looked like there were a few linting checks that still need to be addressed.

[gwaybio]

Minor comments and discussion items - Dave, happy for you to make final updating/merging decisions

[d33bs]

Thank you @gwaybio for your review! Thank you @willdavidson05 for all your work on this too! Merging this in.