Todo

• Get deflines
• Figure out a best way to add ways to execute CLI commands for a module.
• Fasta analyzer: create taxon analyzer, check for allowed and prohibited clades, species, etc.

Commands

Use Python Fire to call functions and class methods.

# Example A
python -m fire ./modules/fasta.py Fasta get_deflines --fpath=/media/sl/T7-Shield/PaRTISeq/blast_db_genomes/Step1_20211004.fa

# Example B
python -m fire ./commands/parti_seq/validate_db_fastas.py validate_db_fastas --arg-fasta-fpath=/media/sl/T7-Shield/PaRTISeq/blast_db_genomes/Step1_20211004.fa