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@jhnwu3 jhnwu3 commented Aug 4, 2025

This pull request focuses on enhancing the documentation for the PyHealth project. It introduces a comprehensive contribution guide, updates tutorial links for PyHealth 2.0, and improves navigation within the documentation. These changes aim to streamline the contribution process and provide clearer guidance for users and contributors.

Documentation Enhancements:

Contribution Guide:

  • Added a detailed "How to Contribute" section in docs/how_to_contribute.rst. This includes guidelines for setting up the development environment, coding standards, types of contributions (datasets, tasks, models), test case requirements, and pull request formatting.

Tutorials:

  • Updated tutorial descriptions in docs/tutorials.rst to reflect compatibility with PyHealth 2.0 and provided updated links to Colab notebooks and videos.

Navigation Improvements:

  • Added the "How to Contribute" page to the table of contents in docs/index.rst for better discoverability.
  • Fixed a formatting issue in docs/index.rst where "advance_tutorials" was incorrectly displayed.

@jhnwu3 jhnwu3 added Highlight for TAs to highlight documentation Improvements or additions to documentation and removed Highlight for TAs to highlight labels Aug 4, 2025
@jhnwu3 jhnwu3 requested a review from Copilot August 4, 2025 02:18
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Pull Request Overview

This pull request enhances the PyHealth documentation by adding a comprehensive contribution guide, updating tutorial links for PyHealth 2.0 compatibility, and improving documentation navigation.

  • Added a detailed "How to Contribute" guide with development setup, coding standards, and contribution guidelines
  • Updated tutorial links to reflect PyHealth 2.0 compatibility and added version labels for older videos
  • Fixed navigation issues and improved discoverability of the contribution guide

Reviewed Changes

Copilot reviewed 3 out of 3 changed files in this pull request and generated 1 comment.

File Description
docs/how_to_contribute.rst New comprehensive contribution guide covering setup, coding standards, and PR requirements
docs/tutorials.rst Updated tutorial links for PyHealth 2.0 and fixed documentation typo
docs/index.rst Added contribution guide to navigation and commented out advance_tutorials

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We provide the following tutorials to help users get started with our pyhealth. Please bare with us as we update the docuemntation on how to use pyhealth.
We provide the following tutorials to help users get started with our pyhealth. Please bare with us as we update the documentation on how to use pyhealth 2.0.
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The word 'bare' should be 'bear'. The correct phrase is 'Please bear with us' (meaning 'please be patient with us').

Suggested change
We provide the following tutorials to help users get started with our pyhealth. Please bare with us as we update the documentation on how to use pyhealth 2.0.
We provide the following tutorials to help users get started with our pyhealth. Please bear with us as we update the documentation on how to use pyhealth 2.0.

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@jhnwu3 jhnwu3 merged commit 068c87d into master Aug 4, 2025
1 check passed
@jhnwu3 jhnwu3 deleted the update/tutorial_docs branch September 10, 2025 19:40
dalloliogm pushed a commit to dalloliogm/PyHealth that referenced this pull request Nov 26, 2025
* more tutorial and doc updates

* fix grammar

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bypassing protections because it's a .rst docs update.
Co-authored-by: John Wu <johnwu3@sunlab-work-01.cs.illinois.edu>
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