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While working on updating #751 to use test-resources/core/mimic3demo, I noticed that the MIMIC3 unit tests were being skipped because the path to mimic3demo was wrong. It looks like this has been broken since #607 so a few other issues have crept into the MIMIC3 unit tests that needed to be patched up.

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Logiquo commented Dec 28, 2025

any particular reason we want to rename .csv.gz file to UPPER CASE? e.g. ADMISSIONS.csv.gz

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This file needs to exist since MIMIC3Dataset always loads the icustays table. However, I only included the header row, as actual data isn't needed to pass the tests.

subject_id,intime,icustay_id,first_careunit,dbsource,last_careunit,outtime

@EricSchrock
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any particular reason we want to rename .csv.gz file to UPPER CASE? e.g. ADMISSIONS.csv.gz

@Logiquo mimic3.yaml defines the default file names expected. Currently, it is set to expect upper case.

@EricSchrock EricSchrock merged commit b6e50c2 into sunlabuiuc:master Dec 28, 2025
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@EricSchrock EricSchrock deleted the fix-mimic3-unit-tests branch December 28, 2025 20:20
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2 participants