When a repository exceeds the 10 MB zip limit, the truncation warning in cmd/run.go:147-149 is emitted via logFn, which is a no-op in non-debug mode (makeLogger at cmd/run.go:321-328). Users on large repos silently receive incomplete graph analysis with no indication that truncation occurred unless they run with --debug.
Fix: print the truncation warning unconditionally to os.Stderr instead of routing it through logFn.
Files: cmd/run.go:147-149, cmd/run.go:321-328
@claude please implement this