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Switch to a base class for dgraph queries

dgraph

Status: Open.

#150 In superphy/prairiedog;

· kevinkle opened on Aug 26, 2019

Cache uids for all kmers

dgraph

Status: Open.

#149 In superphy/prairiedog;

· kevinkle opened on Aug 23, 2019

"uid_in" queries are slow

dgraph

Status: Open.

#145 In superphy/prairiedog;

· kevinkle opened on Aug 22, 2019

Don't call set_schema() if dgraph already initialized

dgraph

Status: Open.

#141 In superphy/prairiedog;

· kevinkle opened on Aug 21, 2019

Parallelize queries per path

dgraph

Status: Open.

#140 In superphy/prairiedog;

· kevinkle opened on Aug 21, 2019

Create a separate log for timing metrics

Status: Open.

#138 In superphy/prairiedog;

· kevinkle opened on Aug 21, 2019

Add way to update Dgraph after bulk load

dgraph

Status: Open.

#137 In superphy/prairiedog;

· kevinkle opened on Aug 20, 2019

Error when first calling rule dgraph via snakemake

dgraph

Status: Open.

#134 In superphy/prairiedog;

· kevinkle opened on Aug 16, 2019

Add support for setting port offset for Snakefile

dgraph

Status: Open.

#133 In superphy/prairiedog;

· kevinkle opened on Aug 15, 2019

Some way to get sets of genomes while accounting for sampling biases

plugins

Status: Open.

#112 In superphy/prairiedog;

· kevinkle opened on Jul 11, 2019

Investigate tagging genomes with ecological data

Status: Open.

#110 In superphy/prairiedog;

· kevinkle opened on Jul 10, 2019

See about using path structure to do a similar filter to scoary

Status: Open.

#102 In superphy/prairiedog;

· kevinkle opened on Jul 2, 2019