Bash scripts

File	Description
cellranger_basic.sh	Demultiplex fastq and run through 10x genomics RNAseq analysis pipeline
qiime2_workflow.sh	QIIME2 read processing, taxonomy barchart figure generation from Swift BioSciences. Runs both DADA2 and Deblur for ASV clustering.
rna_seq_pipeline.sh	RNAseq processing pipeline using nf-core/rnaseq