An open-source platform for developing protein models beyond AlphaFold.
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Updated
Jun 26, 2024 - Python
An open-source platform for developing protein models beyond AlphaFold.
Run AlphaFold2 (and multimer) step by step
This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
Screen interactions with AlphaFold Multimer
GUI for running jobs with a local installation of AlphaFold2. Supports submission to queuing systems.
Map AlphaFold PAE values on a model
fold2go is a nextflow pipeline for in silico prediction of protein structures and interactions through various machine learning models.
AI based protein modeling and design
Here's the code for my master's degree thesis at Università di Pavia (Dipartimento di Biologia e Biotecnologie L. Spallanzani).
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