Bayesian multi-object tracking
Cell tracking and segmentation software
A python algorithm for tracking cells in 3D deforming organs
Track and lineage visualization with btrack and Napari 🌲
Explainable AI model of cell behavior
Harness deep learning and bounding boxes to perform object detection, segmentation, tracking and more.
A common data structure and basic tools for multi-object tracking.
Microscopy image processing with TensorFlow
Napari plugin and other code for BC-FLIS
A Napari plugin for automated cell nuclei detection, cell proliferation & population growth analysis, and single-cell tracking in brightfield and fluorescence microscopy images
The Cell-HOTA repository is an extension of the HOTA (Higher Order Tracking Accuracy) metric, tailored specifically for evaluating cell tracking algorithms
Automated sperm motility analysis pipeline with OpenCV-based detection and standard motility parameter calculations (VCL, VSL, VAP). Features motion-aware cascade matching and batch processing
Knime workflow to facilitate segmentation and tracking in 3D + time cell images using the TGMM 1.0 software by the Keller lab (https://www.janelia.org/lab/keller-lab).
Generalized and streamlined image phenotyping of dynamic objects over time
Deep Learning based segmentation and tracking to understand the dynamics and morphology of cells over time.
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