Open-source software for exploring and analyzing large, high-dimensional image-derived data.
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Jul 21, 2025 - Python
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cellprofiler
Here are 11 public repositories matching this topic...
Python package for processing image-based profiling data
python image-processing cellprofiler microscopy carpenter-lab morphological-profiling cytominer way-lab
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Jan 6, 2026 - Python
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
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Oct 6, 2025 - Python
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
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Jan 6, 2026 - Python
Running cellprofiler on eddie3 / SGE clusters
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Dec 18, 2025 - Python
Install script for CellProfiler v3.1.9 on Ubuntu 18.04.3 LTS(+) - bash, installs python3.6, unet and classify
linux python3 cellprofiler data-analysis wxpython unet cellsegmentation ubuntu1804 classifypixelsunet
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Aug 2, 2021 - Python
Tools for Processing Results from CellPainting Assay
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Nov 15, 2017 - Python
Analyzing Cell Painting results with Dask and Pandas - not yet ready for use by others
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May 24, 2018 - Python
A collection of python modules and command line tools for processing image-based RNAi screens.
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Apr 2, 2019 - Python
Collect distributed cellprofiler results into sqlite databases.
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Nov 24, 2021 - Python
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