The DualRNASeq Pipeline is a comprehensive, automated workflow designed to analyze host-pathogen dualRNA-Seq data, offering insights into gene expression dynamics during infection. Its modular Snakemake framework ensures reproducibility, scalability, and seamless execution on local machines, HPC clusters, or cloud platforms.

A sophisticated bioinformatics pipeline for bacterial pangenome analysis, integrating WGS and RNA-Seq data. It enhances genome completeness with hybrid assemblies, identifies core/accessory genes, and enables pangenome-level transcriptomic profiling. Built on Snakemake, it is scalable, customizable, and optimized for strain-specific insights.