Mutation Testing for Ethereum Smart Contracts

Regexp based tool for mutating generic source code across numerous languages

Customizable permissions for graphene-django.

A tool for fast and accurate summarizing of variant calling format (VCF) files

SARS-Cov-2 Recombinant Finder for fasta sequences

FETCH THE PASSWORD STRETCHER

Enhanced protein mutational sampling using time-lagged variational autoencoders

🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.

Plot Protein: Visualization of Mutations

nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

Python GraphQL Client - PyGQLC

PyTorch Implementation of DeepSequence

Predicting the effect of mutations on protein stability and protein-protein interaction affinity.

Machine learning methods for the prediction of pathology in protein mutations, as in the PMut predictor.

Short scripts to demonstrate data available from MolecularMatch API (api key needed). Data includes clinical trials, drugs, publications, molecular information, bioinformatics, report generation and more.

A bioinformatics pipeline to identify the best available PDB structures for all available variants for specified genes of interest

This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.

Assignments from Professor Roman Yampolskiy's Artificial Intelligence class.

Deep learning neural network to analyse variant-call data, with a Bayesian network to rank functionally important genes