A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
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Nov 12, 2025 - Python
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Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
surveillance ngs clinical metagenomics public-health diagnostics viruses erasmus virology rivm viromics virus-typing
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Sep 1, 2023 - Python
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
python bioinformatics snakemake analysis public-health viruses virology ngs-analysis snakemake-workflow rivm consensus-sequences
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Feb 18, 2026 - Python
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
python bioinformatics snakemake public-health viruses virology ngs-analysis snakemake-workflow rivm consensus-sequences coronavirus coronavirus-analysis
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Jul 3, 2024 - Python
RIVM Bioinformatics Workshop: Genomics Data Wrangling. September 2018.
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Sep 10, 2018 - Python
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