⚠️ feat(pyinstaller): GH Action to build

.github/workflows/build.yaml

@@ -0,0 +1,81 @@
+# push will run on every pushed commit to any branch (so this will rerun the tests
+# once a branch gets merged to main in addition to any new commits on any branch)
+on: push
+
+name: Build
+
+jobs:
+  pyinstaller:
+    runs-on: ${{ matrix.os }}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+
+    steps:
+      - name: Check out code
+        uses: actions/checkout@v3
+        with:
+          persist-credentials: false
+
+      - name: Set up python
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.9'
+
+      - name: Install PostgreSQL and dependencies on Ubuntu
+        if: matrix.os == 'ubuntu-latest'
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y postgresql postgresql-contrib libpq-dev
+
+      - name: Install PostgreSQL and dependencies on macOS
+        if: matrix.os == 'macos-latest'
+        run: |
+          brew update
+          brew install postgresql
+
+      - name: Install PostgreSQL and dependencies on Windows
+        if: matrix.os == 'windows-latest'
+        run: |
+          choco install postgresql
+
+      # https://pyinstaller.org/en/stable/when-things-go-wrong.html#helping-pyinstaller-find-modules
+      - name: Install poetry
+        run: |
+          pip install --upgrade pip
+          pip --version
+          # this isn't the recommended way to install b/c the poetry deps are now
+          # mixed with the service deps. However, getting the alternative to work
+          # on all OSes was getting difficult. This is a quick hack to move forward
+          pip install poetry
+          python -m poetry --version
+          python -m poetry self add poetry-pyinstaller-plugin
+      - name: Install dependencies and then build using pyinstaller
+        run: |
+          python -m poetry install -vv --all-extras --no-interaction --no-cache
+          python -m poetry show -vv
+          python -m poetry env info
+          python -m poetry build
+          # pip install pyinstaller==6.6.0
+          # pyinstaller --paths=./gen3 --clean --name gen3 --hidden-import gen3users --onefile ./gen3/cli/__main__.py
+          # pyinstaller --log-level=DEBUG --debug=imports --clean --name gen3 --hidden-import gen3users --onefile ./gen3/cli/__main__.py
+      - name: Test build
+        run: |
+          ls ./dist/pyinstaller/*/gen3
+          ls ./dist/pyinstaller/*/gen3/gen3
+          cp ./dist/pyinstaller/*/gen3/gen3 ./gen3
+          ls
+          ./gen3 --help
+      - name: Archive artifacts
+        uses: actions/upload-artifact@v4
+        with:
+          name: dist-without-markdown
+          path: |
+            dist
+            !dist/**/*.md
+
+
+
+

.github/workflows/ci.yaml

@@ -1,10 +1,6 @@
 name: CI
 
-on:
-  # run on pushed commits to master and on new commits on pull requests
-  push:
-  pull_request:
-    types: [opened, synchronize]
+on: push
 
 jobs:
   Security:

.github/workflows/docs.yaml

@@ -5,6 +5,7 @@ on:
   push:
     branches-ignore:
       - 'master'
+      - 'main'
     paths-ignore:
       - 'docs/**'
   # Use push trigger since 'paths-ignore' are not respected as expected by 'on.pull_request.paths-ignore', see https://github.com/actions/runner/issues/2324

docs/_build/html/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 5f84980db6ce51f04ab25ae1f011fb32
+config: b941f35ac2dd283dbbba3d55c4f31d39
 tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/_build/html/_modules/gen3/auth.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
     <script src="../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -720,15 +720,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>
 
 

docs/_build/html/_modules/gen3/file.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
     <script src="../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -359,15 +359,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>
 
 

docs/_build/html/_modules/gen3/index.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
     <script src="../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -1100,15 +1100,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>
 
 

docs/_build/html/_modules/gen3/jobs.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
     <script src="../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -331,15 +331,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>
 
 

docs/_build/html/_modules/gen3/metadata.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
     <script src="../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -1118,15 +1118,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>
 
 

docs/_build/html/_modules/gen3/object.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
     <script src="../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -150,15 +150,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>
 
 

docs/_build/html/_modules/gen3/query.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
     <script src="../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -306,15 +306,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>
 
 

docs/_build/html/_modules/gen3/submission.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
     <script src="../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -857,15 +857,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>
 
 

docs/_build/html/_modules/gen3/tools/download/drs_download.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../../../_static/alabaster.css?v=12dfc556" />
     <script src="../../../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
@@ -1527,15 +1527,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>
 
 

docs/_build/html/_modules/gen3/tools/indexing/download_manifest.html

@@ -8,7 +8,7 @@
     <link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=d1102ebc" />
     <link rel="stylesheet" type="text/css" href="../../../../_static/alabaster.css?v=12dfc556" />
     <script src="../../../../_static/documentation_options.js?v=5929fcd5"></script>
-    <script src="../../../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
@@ -607,15 +607,15 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../../search.html" method="get">
       <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
+</search>
 <script>document.getElementById('searchbox').style.display = "block"</script>