Neuroimaging processing pipelines for PASSIAN, a CODEC project
Note: It's possible to consider using a lighter touch for image preprocessing, e.g., using MONAI or TorchIO for data loading and/or augmentation.
- For Preparing T1w (& T2w) MRI, e.g., for deep learning
- QC:
- mriqc
- BrainQCNet (paper; GPU version: BrainQCNet_GPU)
- smriprep
- TorchIO
- MRtrix3 - skull stripping, etc.
- QC:
- MRI prep, e.g., for deep learning
- MRI processing, e.g., for Disease Progression Modelling
- MONAI, e.g., for FL using OpenFL
- ClinicaDL
- TVB Pipeline