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f9e62e0
MRG, ENH: Remove 15-char limit for FIF (#8574)
larsoner Feb 20, 2021
08baf0d
WIP, DOC: Drop dev version warning bar from layout template (#8889)
hoechenberger Feb 21, 2021
b487dcf
Fixing missing info for some templates (#8869)
christian-oreilly Feb 22, 2021
9b01f00
easiest fix ever (#8898)
drammock Feb 23, 2021
0de802a
MRG, ENH: Allow channel-specific annotations (#8896)
larsoner Feb 24, 2021
0b784b8
MAINT: CI (#8953)
larsoner Feb 24, 2021
52ebe72
BUG: Fix bug with no picks (#8954)
larsoner Feb 24, 2021
4928c5c
MRG, BUG: Fix bug with empty dim (#8956)
larsoner Feb 25, 2021
5ea4bda
MRG, ENH: macOS 11 compatiblity for STC plots (#8959)
hoechenberger Feb 25, 2021
8e3bcef
MAINT: Fix test (#8960)
larsoner Feb 25, 2021
8178cca
Ensure times at which chpi are fitted are valid samples (#8827)
wmvanvliet Feb 26, 2021
3a0812f
DOC, MAINT: test theme CSS fixes (#8961)
drammock Feb 26, 2021
6f64726
[MRG] Fix ica.plot_sources exception (#8967)
bloyl Feb 26, 2021
fe6775b
MRG: "GFP" trace in STC time viewer is actually RMS (#8965)
hoechenberger Feb 27, 2021
df227e7
Fix indexing dipoles read from a bdip file (#8963)
wmvanvliet Feb 28, 2021
22ea75b
Fix (#8971)
GuillaumeFavelier Mar 1, 2021
940a1fe
MNT: Migrate VTK Widgets (#8862)
GuillaumeFavelier Mar 1, 2021
04d3100
FIX: Brain lights (#8972)
GuillaumeFavelier Mar 1, 2021
01bf14e
MAINT: Skip matplotlib pre for now (#8973)
larsoner Mar 1, 2021
fc6ebb0
DOC, STY: fix dataframe scrolling (#8977)
drammock Mar 2, 2021
2b09a17
[MRG] Add optional different ways of averaging EpochsTFR (#8879)
adam2392 Mar 2, 2021
dc86ec0
Fix: Wrong channel-adjacency-matrix for Neuromag122 (#8891)
marsipu Mar 2, 2021
250eabf
make large rotation penalty optional in chpi function (#8770)
bloyl Mar 2, 2021
632f119
MAINT: Revert conda azure change (#8978)
larsoner Mar 2, 2021
951dbb8
fix link to install instructions [skip azp][skip github] (#8980)
drammock Mar 2, 2021
d6476f8
MRG, ENH: Better float slider spacing and interaction (#8975)
larsoner Mar 3, 2021
f68d047
FIX: Fix coordinate calculations (#8983)
larsoner Mar 3, 2021
20ed020
FIX: Fix rebuilding of all files (#8988)
larsoner Mar 3, 2021
4514ea7
MRG, DOC, ENH: new frequency-tagging tutorial (#8867)
dominikwelke Mar 4, 2021
0135fca
MRG, BUG: Fix interactive update of mapping (#8985)
larsoner Mar 4, 2021
91f6081
ENH: Allow automated compilation of metadata (#8834)
hoechenberger Mar 5, 2021
612a026
FIX: Numpydoc
larsoner Mar 5, 2021
4cecd9d
Refactor (#8998)
GuillaumeFavelier Mar 5, 2021
75fa7b1
VIZ: fix pick index when right-click on channel name in ica plot (#8996)
drammock Mar 6, 2021
14a418f
MNT: _all_renderers & _all_plotters (#8999)
GuillaumeFavelier Mar 8, 2021
bf57aa0
MRG, DOC: adds bem model error solution at the end of fix_bem_in_blen…
cortex-current Mar 8, 2021
1bc407a
MRG, ENH: Add Maxwell basis computation (#8822)
larsoner Mar 8, 2021
9d2c2b6
DOC: Fixes to metadata docstring [skip azp][skip github] (#9013)
hoechenberger Mar 9, 2021
a40ad4b
MAINT: Better pre (#9012)
larsoner Mar 9, 2021
97a69e6
MNT: menu_bar & status_bar (#9014)
GuillaumeFavelier Mar 9, 2021
31d1d0c
FIX: Handling bad marker coils when reading KIT data #8981 (#8989)
JD-Zhu Mar 9, 2021
2d2e2ce
DOC: Correct `plot_epochs` doc (#9009)
HanBnrd Mar 9, 2021
64c90ce
Fix epochs tutorial (#9017)
HanBnrd Mar 9, 2021
aabdda6
BUG: Fix extension (#9019)
larsoner Mar 10, 2021
e94b439
MRG, ENH: Slider triggers callback during dragging (#9023)
hoechenberger Mar 10, 2021
7b4d4e4
MAINT: Circle [skip azp] [skip github] (#9024)
larsoner Mar 10, 2021
9e5916e
MNT: notebook conditionals in Brain & _update (#9016)
GuillaumeFavelier Mar 11, 2021
b707d37
MAINT: Disable inline comments (#9026)
larsoner Mar 11, 2021
e889e26
MAINT: Remove pyface exclusion (#9028)
larsoner Mar 11, 2021
633bee3
MRG, ENH: viz.plot_drop_log() gains special-handling for subject=None…
hoechenberger Mar 12, 2021
6cfd304
MRG, MAINT: Cleaner split, fewer skips in _brain tests (#9029)
larsoner Mar 12, 2021
1ae8e10
MAINT: Simplify expression (followup to #9015) (#9035)
hoechenberger Mar 12, 2021
d309e3d
MRG, DOC: Bump theme version (#9036)
drammock Mar 14, 2021
2114c06
ENH: Allow adding custom JavaScript to Report (#9037)
hoechenberger Mar 14, 2021
3319faf
MAINT: Fix circle (#9039)
larsoner Mar 14, 2021
623553f
DOC: convert references in plot_parcellation to use footcite (#9032)
NicolasGensollen Mar 15, 2021
f751fe3
MAINT: Link earlier [skip github] [skip azp] (#9041)
larsoner Mar 15, 2021
b0778b8
fix bibtex plot_evoked_whitening (#9042)
eort Mar 15, 2021
1171b4a
Adding bibtex in plot_otp (#9049)
marsipu Mar 15, 2021
eec545f
update footcite [skip github] [skip azp] (#9054)
eioe Mar 15, 2021
d489bcf
DOC update footcite maxwell.py (#9043)
vagechirkov Mar 15, 2021
5167715
Bibtex raw py (#9048)
ramkpari Mar 15, 2021
2f908df
Fixed bibtex references in plot_background_statistics (#9046)
sfc-neuro Mar 15, 2021
c25aeee
bibtex fix plot_time_frequency_global_field_power (#9052)
neurogima Mar 15, 2021
18cd16b
Fix bibtex citation issue #8929. (#9051)
anaradanovic Mar 15, 2021
9798a63
FIX: bibtex #8933 (#9047)
kimcoco Mar 15, 2021
428e73b
FIX: fix sideways helmet plot (#9059)
HanBnrd Mar 15, 2021
0d8a7b0
DOC: use bibtex in plot_sleep (#9044)
HanBnrd Mar 15, 2021
f98e922
DOC: use bibtex in plot_source_power_spectrum_opm.py (#8906) (#9050)
matteoanelli Mar 15, 2021
77cf51c
MAINT: Disable macOS screenshot test (#9061)
larsoner Mar 15, 2021
505e7a0
Use footcite in evoked.py (#9077)
mdclarke Mar 15, 2021
0974fc5
fix bibtex plot_15_handling_bad_channels (#9071)
eort Mar 15, 2021
271eb10
footcite footbibliography change (#9075)
ChristinaZhao Mar 15, 2021
c22263c
update citations with bibtex (#9068)
eioe Mar 15, 2021
3ca4377
using bibtex for reference (#9056)
Falach Mar 15, 2021
1fb6e41
Adding bibtex in plot_background_filtering.py (#9064)
marsipu Mar 15, 2021
8e6858e
fix footcite (#9066)
alexrockhill Mar 15, 2021
d167f95
Fix bibtex. (#9063)
adam2392 Mar 15, 2021
fabd29f
Update plot_brainstorm_phantom_elekta.py (#9083)
mdclarke Mar 15, 2021
94870a5
Updated Bibtex references in plot_receptive_field.py (#9081)
ramkpari Mar 15, 2021
6d1ee18
convert references in mne/connectivity/envelope.py to use footcite / …
catalinamagalvan Mar 15, 2021
f0aa384
added bibtex citation (#9070)
vpeterson Mar 15, 2021
b495090
DOC: use bibtex in plot_simulated_raw_data_using_subject_anatomy.py (…
timonmerk Mar 15, 2021
e1dacb5
use footcite in otp.py (#9084)
mdclarke Mar 15, 2021
7168e68
Update plot_read_noise_covariance_matrix.py (#9085)
mdclarke Mar 15, 2021
cc80458
DOC: ica example (#9090)
cmista Mar 15, 2021
b465989
DOC Bibtex fix for spatial_resolution.py (#9079)
NeuroLaunch Mar 16, 2021
8be6585
Ica overlay tmax documentation (#9065)
sfc-neuro Mar 16, 2021
5e63884
DOC: use bibtex in xdawn.py (#8927) (#9067)
matteoanelli Mar 16, 2021
602a94f
DOC : Adds copy button to code blocks (#9098)
ramkpari Mar 16, 2021
80b029d
fix references in examples/visualization/plot_channel_epochs_image.py…
neurogima Mar 16, 2021
04bb93a
FIX saving fif file with the wrong extension (#9062)
vagechirkov Mar 16, 2021
52e97df
[FIX]: sort by spectral ratio part of fit + returned_filter not used …
vpeterson Mar 16, 2021
04c58d7
split up code cells in example (#9092)
eort Mar 16, 2021
c8f0f51
Fix bibtex citation in plot_sensor_regression.py issue#8905 (#9058)
anaradanovic Mar 16, 2021
3da7e33
DOC: Fix bibtex citation temazepam.py #8921. (#9104)
anaradanovic Mar 16, 2021
1703bfd
DOC: Added a note to decim parameter usage in tutorial code snippet (…
ramkpari Mar 16, 2021
b239ad3
DOC: Fix bibtex citation mxne_inverse.py #8922. (#9106)
anaradanovic Mar 16, 2021
0a61e1c
Xdawn issue (#9102)
catalinamagalvan Mar 16, 2021
f1ff6ba
Bibtex for limo.py (#9074)
nordme Mar 16, 2021
727807d
adding one sentence regarding the lowpass filter (#9089)
ChristinaZhao Mar 16, 2021
c638f74
fix errant merge (references outside docstring) [skip github][skip az…
drammock Mar 16, 2021
53757d0
ENH: dipole to MNI space (#9091)
vagechirkov Mar 17, 2021
bd6dcf7
Refactor (#9121)
GuillaumeFavelier Mar 17, 2021
88cbfa8
BUG: Fixing Report multiprocessing (#9109)
marsipu Mar 17, 2021
afce272
Fix BUG: epochs.plot_image(evoked=False) doesn't show time in seconds…
matteoanelli Mar 17, 2021
5f0beb9
ENH: Help button (#9123)
GuillaumeFavelier Mar 17, 2021
1026ad7
DOC: use footcite in mne/datasets/sleep_physionet/age.py (#9105)
catalinamagalvan Mar 17, 2021
b9859ed
Deprecate time-frequency DICS beamformer (#9122)
britta-wstnr Mar 17, 2021
82f8476
ENH: Cancel old actions with new pushes [skip azp] [skip circle] (#9128)
larsoner Mar 17, 2021
34d338b
Add optipng to gitignore (#9130)
HanBnrd Mar 17, 2021
d8dbf98
BUG Fixed: Evoked plot image. (#9132)
matteoanelli Mar 17, 2021
c29a32d
Correct references in hf_sef.py and limo.py #8916 #9080 (#9080)
nordme Mar 17, 2021
b27e06f
DOC: convert references in tutorials/sample-datasets/plot_brainstorm_…
catalinamagalvan Mar 17, 2021
598cde5
DOC: Tweak the plotting params so that brain figures don't look out-o…
catalinamagalvan Mar 18, 2021
56e9fbe
ICA max_iter new defaults (#9099)
kimcoco Mar 18, 2021
f09dfb3
DOC: Fix bibtex citation in parametric.py #8931. (#9142)
anaradanovic Mar 18, 2021
a6abf36
Fixed length epochs overlap (#9096)
sfc-neuro Mar 18, 2021
56e41c9
DOC: Fix bibtex citation in plot_brainstorm_phantom_ctf.py #8940. (#9…
anaradanovic Mar 18, 2021
050a1f3
[MRG] anonymize sex and hand when keep_his is false (#9103)
Falach Mar 18, 2021
d8fc038
BUG: Hotfix
larsoner Mar 18, 2021
0ddde8c
ENH: different color for each volume source space (#9114)
vagechirkov Mar 18, 2021
4ca89e6
DOC: Fix bibtex citation in plot_dipole_orientations.py #8944. (#9144)
anaradanovic Mar 18, 2021
ee18776
[MRG; ENH] Add "add_estimated_fiducials" to DigMontage (#9118)
adam2392 Mar 18, 2021
fc3f2b5
DOC: Improve documentation of Report-Class (#9113)
marsipu Mar 18, 2021
ab0f417
DOC: Added an example for bipolar referencing (#9127)
ramkpari Mar 18, 2021
f20c60e
MRG: FIX: TF_DICS mode 'cwt_morlet' can't take list of cycle numbers …
kimcoco Mar 18, 2021
916f364
DOC: Fix bibtex citation and add reference to references.bib #9148 (#…
anaradanovic Mar 18, 2021
b114874
Fix doc build on main (#9154)
hoechenberger Mar 19, 2021
82b3459
DOC: Correcting logger info output for spectral connectivity function…
anaradanovic Mar 19, 2021
4dacaa3
bibtext and reference.bib updated for 'Correction for multiple compar…
FinLouarn Mar 19, 2021
2500586
MAINT: Fix for sklearn regression (#9164)
larsoner Mar 19, 2021
e9dc11f
[MRG, BUG, ENH] Add axes for plot mne.channels.layout (#9163)
alexrockhill Mar 19, 2021
d885e4a
MRG: Add tutorial for make_fixed_length_epochs function (#9156)
nordme Mar 19, 2021
8c5f92d
added footcite for transform.py (#9157)
apoorva6262 Mar 19, 2021
856f612
MAINT: Move function (#9165)
larsoner Mar 19, 2021
bc78db5
ENH: add _repr_html_ method in the classes Info and BaseRaw (#9161)
vagechirkov Mar 19, 2021
46d00e5
Fix interactive zoom in plot_epochs_image.py (evoked=True) (#9152)
mdclarke Mar 19, 2021
49536e3
[ENH]: add apply_function method to epochs and evoked objects (#9088)
vpeterson Mar 19, 2021
12b43d6
change log updates: tutorial, apply_function additions (#9170)
nordme Mar 19, 2021
523413f
DOC: Add HEDs to glossary and reference in tutorial and epochs.py #8…
anaradanovic Mar 20, 2021
dc4545c
DOC: updated the migrating.rst (#9169)
apoorva6262 Mar 20, 2021
0816e31
DOC: Add description about ´coord_frame´ parameter in mne.channels.ma…
catalinamagalvan Mar 20, 2021
8eda56f
reduce memory usage (#9171)
drammock Mar 20, 2021
fd1723f
[DOC] Stc near sensors doc (#9160)
eort Mar 20, 2021
b5e9c38
BF: Only use valid FIFF values for anonymization (#9175)
hoechenberger Mar 21, 2021
bbcba95
BUG : Fixes Bug where ylim would only be applied to the first channel…
ramkpari Mar 21, 2021
62ca227
adding add_reference_channels as a method of Raw/Epochs/Evoked (#9135)
Falach Mar 21, 2021
1e403b2
ENH: Extend _repr_html_ method for Raw (#9172)
vagechirkov Mar 21, 2021
75a408e
Fix locale (#9179)
GuillaumeFavelier Mar 22, 2021
66430ed
MRG FIX: fNIRS picks for different types (#9178)
rob-luke Mar 22, 2021
7db3238
ENH: Speed up plot_ica_properties (#9174)
vagechirkov Mar 22, 2021
acf25ef
Dark-mode to PyVista-Brain (pair-programmed with @GuillaumeFavelier) …
marsipu Mar 22, 2021
c2d4e4b
MRG, ENH: Improve Epochs._name and Evoked.comment (#9027)
hoechenberger Mar 22, 2021
e365bfb
MRG: Additional checking of fNIRS data before processing (#9184)
rob-luke Mar 23, 2021
59008cf
[MRG, ENH] Update plot_ecog tutorial to use real data, visualize seiz…
alexrockhill Mar 23, 2021
70709f5
MRG: Test fnirs channel structures for chromophore data (#9185)
rob-luke Mar 23, 2021
2c888c5
ENH: Traces dock widget (#9180)
GuillaumeFavelier Mar 24, 2021
e430158
ENH: Add fast plotting ICA properties (#9183)
vagechirkov Mar 24, 2021
13a0de5
STY: website fixes (#9191)
drammock Mar 24, 2021
39524d2
Fix mne.viz.plot_compare_evokeds did not check type of combine (#9151)
matteoanelli Mar 25, 2021
0c225f4
MRG, FIX, ENH: First_samp support and simulation tests (#9166)
NeuroLaunch Mar 25, 2021
a98c4f5
MRG, ENH: add _repr_html_ method in the class BaseEpochs (#9189)
vagechirkov Mar 25, 2021
b24f531
Ica example 2 tutorial (#9145)
neurogima Mar 25, 2021
19db735
MRG: Support µV in EDF files (in addition to uV) (#9187)
Sumalyo Mar 25, 2021
acffc2e
add support for microvolt units (#9196)
Sumalyo Mar 25, 2021
4ba386b
BUG: Fix example dtype (#9197)
larsoner Mar 25, 2021
a667171
FIX: Rename
larsoner Mar 26, 2021
7350ca8
Enable welcome bot (#9194)
hoechenberger Mar 26, 2021
148de16
MAINT: Update for latest mpl (#9200)
larsoner Mar 26, 2021
2a8d56b
DOC: Move many Epochs docstrings to docdict, and use them in BaseEpoc…
hoechenberger Mar 28, 2021
02bb98b
revert canceller workflow [ci skip] (#9213)
drammock Mar 29, 2021
5e38787
Cancel jobs after 90 min max (#9212)
hoechenberger Mar 29, 2021
8d6b115
MRG: Check that fnirs types are not mixed (#9211)
rob-luke Mar 29, 2021
5259007
FIX: Linkcheck
larsoner Mar 29, 2021
b619f54
MAINT: fix click testing (#9217)
drammock Mar 30, 2021
58ccac7
DOC: Last few footbibs (#9218)
drammock Mar 30, 2021
53a8634
ENH: Add Evoked.baseline (#9210)
hoechenberger Mar 30, 2021
014e952
Recommend to baseline after (but not before) ICA; and warn otherwise;…
hoechenberger Mar 30, 2021
98fb5c2
MRG: Add `units` parameter to get_data for Raw (#9136)
HanBnrd Mar 30, 2021
88df35f
DOC: more website fixes (#9202)
drammock Mar 30, 2021
53ce587
FIX: don't use op.realpath when reading raw (#9227)
drammock Mar 31, 2021
b6542f5
fix API parameter column width [skip github][skip azp] (#9230)
drammock Apr 1, 2021
067d25a
Make find_ecg_events work even if detection fails (#9236)
hoechenberger Apr 2, 2021
5cc8f29
DOC: Some improvements to linear_regression() (#9237)
hoechenberger Apr 2, 2021
2897d4b
Add support for importing channel location from XYZ/CSV files. (#9203)
jackz314 Apr 3, 2021
a055120
Doc hotfix for #9237 [skip azp][skip github] (#9239)
hoechenberger Apr 3, 2021
5f67698
MAINT: Work around PyVista change (#9240)
larsoner Apr 3, 2021
3afa030
Support single-epoch files for EEGLAB epoch. (#9204)
jackz314 Apr 5, 2021
5cc6eb8
Fix apply function (#9235)
drammock Apr 5, 2021
4080b43
ENH : add new interpolate_mark_bads function (#9241)
agramfort Apr 5, 2021
dcdbd07
MAINT: Add linkcheck (#9247)
larsoner Apr 5, 2021
2bfac65
expose colorbar label parameter in plot_sensors_connectivity (#9248)
drammock Apr 5, 2021
d33e105
fix: error when passing axes to plot_compare_evokeds (#9252)
drammock Apr 6, 2021
4891268
fix for MPL 3.4.x (#9253)
drammock Apr 6, 2021
96b1d89
Fix html table scrolling again (#9254)
drammock Apr 6, 2021
4add7d1
MRG, MAINT: Better notebook tests (#9034)
larsoner Apr 6, 2021
f6b4dd8
BUG: Fix coordinate frame (#9251)
larsoner Apr 6, 2021
5ae29cd
ENH: add to_data_frame method to EpochsTFR (#9124)
eioe Apr 6, 2021
3ea1705
MRG, ENH: Epochs.equalize_event_counts() operates on all events by de…
hoechenberger Apr 7, 2021
3893c4e
MRG, ENH: Add projoff option (#9262)
larsoner Apr 8, 2021
3bc8f4e
MAINT: make exclude optional so its backwards compatible with autorej…
jasmainak Apr 8, 2021
176680a
ENH: button to save movie (#9190)
GuillaumeFavelier Apr 8, 2021
3d00c45
ENH: Add support for missing dir (#9268)
larsoner Apr 10, 2021
a067a3f
Fix issue where set ylim parameter gets swapped across channel types …
ramkpari Apr 10, 2021
53a79ec
MRG: Use info for checking NIRS metadata, not raw (#9280)
rob-luke Apr 11, 2021
df6115e
Use info for checking more NIRS metadata, not raw (#9282)
HanBnrd Apr 12, 2021
392d5ca
FIX: Prepare for PyVista 0.30.0 (#9274)
GuillaumeFavelier Apr 12, 2021
4a0ff5c
FIX: Link [ci skip]
larsoner Apr 12, 2021
dcec6c6
Better warning message for EDF files with annotations only (#9283)
cbrnr Apr 12, 2021
eaeef19
MRG: Return empty list of SSP projectors if no ECG, EOG events were f…
hoechenberger Apr 12, 2021
02978df
ENH+DOC: read_raw_nicolet raise informative message when passing head…
agramfort Apr 12, 2021
ed485f9
FIX : add_channels now resets picks (#9246)
agramfort Apr 13, 2021
e57f087
MRG, ENH: Allow to pass multiple channels to find_eog_events(), creat…
hoechenberger Apr 13, 2021
e8b28f2
MRG, BUG: Fix checking of subjects in eltc (#9284)
larsoner Apr 13, 2021
70bc735
BUG: Fix bug with next without iter (#9296)
larsoner Apr 14, 2021
8b2394b
DOC montage (#9298)
christianbrodbeck Apr 15, 2021
bc9ed3f
MAINT: Restore test (#9300)
larsoner Apr 15, 2021
7b428b9
MRG ENH/BUG Add exclude parameter to plot_evoked_topo (#9278)
ramkpari Apr 15, 2021
ead743b
FIX: flat map plot in notebook (#9305)
kingjr Apr 16, 2021
d0a0695
FIX: Prepare for PyVista 0.30.0 (part 2) (#9291)
GuillaumeFavelier Apr 19, 2021
73ab63e
DOC: I was wrong [ci skip]
larsoner Apr 19, 2021
208a081
MAINT: Use latest SG [skip github] [skip azp] (#9314)
larsoner Apr 19, 2021
6cd38e3
DOC: Update link [circle linkcheck] [skip azp] [skip github] (#9316)
larsoner Apr 19, 2021
f6d9c73
More website fixes (#9288)
drammock Apr 19, 2021
e8207ae
FIX: paintEvent/resizeEvent & update (#9313)
GuillaumeFavelier Apr 19, 2021
7c5448a
BUG: Fix grow_labels (#9317)
larsoner Apr 19, 2021
71e6476
MRG, BUG: Fix positioning of flatmaps (#9315)
larsoner Apr 19, 2021
f10d0d3
ignore jinja deprecation warning [skip azp][skip github] (#9321)
drammock Apr 19, 2021
87c9eaf
[MRG, DOC] Remove CSD average reference note (#9320)
alexrockhill Apr 20, 2021
0afbf07
MNT: BackgroundPlotter has no attribute named image (#9318)
GuillaumeFavelier Apr 20, 2021
c5b1297
Add XDF to "Reading EEG data" tutorial (#9289)
cbrnr Apr 20, 2021
507b3a4
MAINT: Rename examples and tutorials (#9292)
larsoner Apr 20, 2021
653ada8
FIX: Hotfix for start
larsoner Apr 20, 2021
19b62e9
WIP: FIX brainvision I/O: Software Filters section (#9299)
christianbrodbeck Apr 20, 2021
fe0d3e3
MAINT: Mark more tests as slow for macOS (#9324)
larsoner Apr 20, 2021
ec1d699
MAINT: Check name URLs (#9323)
larsoner Apr 20, 2021
9b2fc9c
BUG: Fix doc build (#9325)
larsoner Apr 21, 2021
74f3366
FIX: Deploy conditional
larsoner Apr 21, 2021
aa526c8
DOC: Explicate that Annotations onsets & durations are in seconds [sk…
hoechenberger Apr 21, 2021
f96dfe2
fix epochs vlines (#9326)
drammock Apr 21, 2021
f90c595
fix test [skip circle] (#9332)
drammock Apr 21, 2021
723ac8f
restore MPL toolbar for PSD plots (#9331)
drammock Apr 22, 2021
350f76b
ENH: Speed up set_bipolar_reference (#9270)
marsipu Apr 22, 2021
73bf708
MRG, MAINT: Better split of reqs (#9337)
larsoner Apr 22, 2021
4f0ba23
FIX: focalpoint (#9010)
GuillaumeFavelier Apr 23, 2021
e4a1571
WIP: Adds support for fNIRS data to set_montage and new standard arti…
rob-luke Apr 23, 2021
c6b22e8
Add functionality to export to EEGLAB .set (#9192)
jackz314 Apr 23, 2021
b3cbe52
nitpicks in eeglab export (#9344)
agramfort Apr 23, 2021
0f62cc3
Merge remote-tracking branch 'upstream/main' into addNIRSport
rob-luke Apr 24, 2021
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447 changes: 288 additions & 159 deletions .circleci/config.yml

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2 changes: 2 additions & 0 deletions .coveragerc
Original file line number Diff line number Diff line change
Expand Up @@ -14,3 +14,5 @@ omit =
exclude_lines =
pragma: no cover
if __name__ == .__main__.:
@abstractmethod
@abstractclassmethod
8 changes: 3 additions & 5 deletions .github/ISSUE_TEMPLATE/bug_report.md
Original file line number Diff line number Diff line change
Expand Up @@ -7,13 +7,11 @@ assignees: ''
---

**READ THIS FIRST:** If you are having trouble getting MNE-Python to work with
your own data, you should ask for help on one of our other channels:

- [email list](https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis)
- [Gitter (chat)](https://gitter.im/mne-tools/mne-python)
your own data, you should ask for help on the
[MNE Forum](https://mne.discourse.group).

Our GitHub issue tracker is only used to report bugs and suggest improvements
to MNE-Python. For any other questions, please use the email list or Gitter.
to MNE-Python. For any other questions, please use the forum.
Usage questions that are posted as GitHub issues are usually closed without
being answered. See
[the FAQ entry on filing bug reports](https://mne.tools/dev/overview/faq.html#i-think-i-found-a-bug-what-do-i-do)
Expand Down
7 changes: 2 additions & 5 deletions .github/ISSUE_TEMPLATE/config.yml
Original file line number Diff line number Diff line change
@@ -1,8 +1,5 @@
blank_issues_enabled: false
contact_links:
- name: Mailing list
url: http://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
- name: Forum
url: https://mne.discourse.group
about: For questions about analysis and usage, and announcements of interest to the neuroimaging community
- name: Gitter
url: https://gitter.im/mne-tools/mne-python
about: Users and developers can chat, troubleshoot and share code samples on our gitter channel
10 changes: 3 additions & 7 deletions .github/ISSUE_TEMPLATE/question.md
Original file line number Diff line number Diff line change
Expand Up @@ -8,12 +8,8 @@ assignees: ''
# https://github.com/matplotlib/matplotlib/blob/d9aee8eb2bd989d6cfbe21c31ff086dab935bde5/.github/ISSUE_TEMPLATE/questions.md
---

If your issue is a usage question, you should ask for help on one of our other channels:

- [email list](https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis)
- [Gitter (chat)](https://gitter.im/mne-tools/mne-python)
If your issue is a usage question, you should ask for help on the
[MNE Forum](https://mne.discourse.group).

Our GitHub issue tracker is only used to report bugs and suggest improvements
to MNE-Python. For any other questions, please use the email list or Gitter.
Usage questions that are posted as GitHub issues are usually closed without
being answered.
to MNE-Python. For any other questions, please use the forum.
21 changes: 21 additions & 0 deletions .github/config.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
# Configuration for welcome - https://github.com/behaviorbot/welcome

# Configuration for new-issue-welcome - https://github.com/behaviorbot/new-issue-welcome

# Comment to be posted to on first time issues
newIssueWelcomeComment: >
Hello! 👋 Thanks for opening your first issue here! ❤️ We will try to get back to you soon. 🚴🏽‍♂️

# Configuration for new-pr-welcome - https://github.com/behaviorbot/new-pr-welcome

# Comment to be posted to on PRs from first time contributors in your repository
newPRWelcomeComment: >
Hello! 👋 Thanks for opening your first pull request here! ❤️ We will try to get back to you soon. 🚴🏽‍♂️

# Configuration for first-pr-merge - https://github.com/behaviorbot/first-pr-merge

# Comment to be posted to on pull requests merged by a first time user
firstPRMergeComment: >
🎉 Congrats on merging your first pull request! 🥳 Looking forward to seeing more from you in the future! 💪

# It is recommended to include as many gifs and emojis as possible!
19 changes: 2 additions & 17 deletions .github/workflows/codespell_and_flake.yml
Original file line number Diff line number Diff line change
Expand Up @@ -8,27 +8,12 @@ on:
- '*'

jobs:
check_skip:
runs-on: ubuntu-20.04
outputs:
skip: ${{ steps.result_step.outputs.ci-skip }}
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0
- id: result_step
uses: mstachniuk/ci-skip@master
with:
commit-filter: '[skip ci];[ci skip];[skip github]'
commit-filter-separator: ';'

style:
needs: check_skip
if: ${{ needs.check_skip.outputs.skip == 'false' }}
timeout-minutes: 90
runs-on: ubuntu-20.04
env:
CODESPELL_DIRS: 'mne/ doc/ tutorials/ examples/'
CODESPELL_SKIPS: 'doc/auto_*,*.fif,*.eve,*.gz,*.tgz,*.zip,*.mat,*.stc,*.label,*.w,*.bz2,*.annot,*.sulc,*.log,*.local-copy,*.orig_avg,*.inflated_avg,*.gii,*.pyc,*.doctree,*.pickle,*.inv,*.png,*.edf,*.touch,*.thickness,*.nofix,*.volume,*.defect_borders,*.mgh,lh.*,rh.*,COR-*,FreeSurferColorLUT.txt,*.examples,.xdebug_mris_calc,bad.segments,BadChannels,*.hist,empty_file,*.orig,*.js,*.map,*.ipynb,searchindex.dat,install_mne_c.rst,plot_*.rst,*.rst.txt,c_EULA.rst*,*.html,gdf_encodes.txt,*.svg'
CODESPELL_SKIPS: 'doc/auto_*,*.fif,*.eve,*.gz,*.tgz,*.zip,*.mat,*.stc,*.label,*.w,*.bz2,*.annot,*.sulc,*.log,*.local-copy,*.orig_avg,*.inflated_avg,*.gii,*.pyc,*.doctree,*.pickle,*.inv,*.png,*.edf,*.touch,*.thickness,*.nofix,*.volume,*.defect_borders,*.mgh,lh.*,rh.*,COR-*,FreeSurferColorLUT.txt,*.examples,.xdebug_mris_calc,bad.segments,BadChannels,*.hist,empty_file,*.orig,*.js,*.map,*.ipynb,searchindex.dat,install_mne_c.rst,plot_*.rst,*.rst.txt,c_EULA.rst*,*.html,gdf_encodes.txt,*.svg,*.bib,'
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
Expand Down
9 changes: 9 additions & 0 deletions .github/workflows/compat_minimal.yml
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,7 @@ jobs:

# Minimal (runs with and without testing data)
job:
timeout-minutes: 90
needs: check_skip
if: ${{ needs.check_skip.outputs.skip == 'false' }}
name: 'py3.7'
Expand Down Expand Up @@ -64,6 +65,14 @@ jobs:
- shell: bash -el {0}
run: ./tools/github_actions_infos.sh
name: 'Show infos'
- shell: bash -el {0}
run: ./tools/get_testing_version.sh
name: 'Get testing version'
- uses: actions/cache@v2
with:
key: ${{ env.TESTING_VERSION }}
path: ~/mne_data
name: 'Cache testing data'
- shell: bash -el {0}
run: ./tools/github_actions_download.sh
name: 'Download testing data'
Expand Down
9 changes: 9 additions & 0 deletions .github/workflows/compat_old.yml
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,7 @@ jobs:

# Old dependencies
job:
timeout-minutes: 90
needs: check_skip
if: ${{ needs.check_skip.outputs.skip == 'false' }}
name: 'py3.6'
Expand Down Expand Up @@ -57,6 +58,14 @@ jobs:
- shell: bash -el {0}
run: ./tools/github_actions_infos.sh
name: 'Show infos'
- shell: bash -el {0}
run: ./tools/get_testing_version.sh
name: 'Get testing version'
- uses: actions/cache@v2
with:
key: ${{ env.TESTING_VERSION }}
path: ~/mne_data
name: 'Cache testing data'
- shell: bash -el {0}
run: ./tools/github_actions_download.sh
name: 'Download testing data'
Expand Down
12 changes: 12 additions & 0 deletions .github/workflows/linux_conda.yml
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,7 @@ jobs:

# Linux
job:
timeout-minutes: 90
needs: check_skip
if: ${{ needs.check_skip.outputs.skip == 'false' }}
name: 'py3.8'
Expand Down Expand Up @@ -53,12 +54,23 @@ jobs:
./tools/github_actions_dependencies.sh
source tools/get_minimal_commands.sh
name: 'Install dependencies'
- shell: bash -el {0}
run: mne_surf2bem --version
name: 'Check minimal commands'
- shell: bash -el {0}
run: ./tools/github_actions_install.sh
name: 'Install MNE'
- shell: bash -el {0}
run: ./tools/github_actions_infos.sh
name: 'Show infos'
- shell: bash -el {0}
run: ./tools/get_testing_version.sh
name: 'Get testing version'
- uses: actions/cache@v2
with:
key: ${{ env.TESTING_VERSION }}
path: ~/mne_data
name: 'Cache testing data'
- shell: bash -el {0}
run: ./tools/github_actions_download.sh
name: 'Download testing data'
Expand Down
16 changes: 14 additions & 2 deletions .github/workflows/linux_pip.yml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name: 'linux / pip'
name: 'linux / pip-pre'
on:
push:
branches:
Expand All @@ -22,8 +22,9 @@ jobs:
commit-filter: '[skip ci];[ci skip];[skip github]'
commit-filter-separator: ';'

# PIP + non-default stim channel + log level info
# PIP-pre + non-default stim channel + log level info
job:
timeout-minutes: 90
needs: check_skip
if: ${{ needs.check_skip.outputs.skip == 'false' }}
name: 'py3.9'
Expand Down Expand Up @@ -51,12 +52,23 @@ jobs:
./tools/github_actions_dependencies.sh
source tools/get_minimal_commands.sh
name: 'Install dependencies'
- shell: bash -el {0}
run: mne_surf2bem --version
name: 'Check minimal commands'
- shell: bash -el {0}
run: ./tools/github_actions_install.sh
name: 'Install MNE'
- shell: bash -el {0}
run: ./tools/github_actions_infos.sh
name: 'Show infos'
- shell: bash -el {0}
run: ./tools/get_testing_version.sh
name: 'Get testing version'
- uses: actions/cache@v2
with:
key: ${{ env.TESTING_VERSION }}
path: ~/mne_data
name: 'Cache testing data'
- shell: bash -el {0}
run: ./tools/github_actions_download.sh
name: 'Download testing data'
Expand Down
12 changes: 12 additions & 0 deletions .github/workflows/macos_conda.yml
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,7 @@ jobs:
commit-filter-separator: ';'

job:
timeout-minutes: 90
needs: check_skip
if: ${{ needs.check_skip.outputs.skip == 'false' }}
name: 'py3.8'
Expand Down Expand Up @@ -50,12 +51,23 @@ jobs:
./tools/github_actions_dependencies.sh
source tools/get_minimal_commands.sh
name: 'Install dependencies'
- shell: bash -el {0}
run: mne_surf2bem --version
name: 'Check minimal commands'
- shell: bash -el {0}
run: ./tools/github_actions_install.sh
name: 'Install MNE'
- shell: bash -el {0}
run: ./tools/github_actions_infos.sh
name: 'Show infos'
- shell: bash -el {0}
run: ./tools/get_testing_version.sh
name: 'Get testing version'
- uses: actions/cache@v2
with:
key: ${{ env.TESTING_VERSION }}
path: ~/mne_data
name: 'Cache testing data'
- shell: bash -el {0}
run: ./tools/github_actions_download.sh
name: 'Download testing data'
Expand Down
1 change: 1 addition & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -64,6 +64,7 @@ doc/coverages
doc/samples
doc/*.dat
doc/fil-result
doc/optipng.exe
cover
*.html

Expand Down
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