Ensure i_plasma_pedestal=0 profile does not have 0 elements

[timothy-nunn]

Adds in a check of the profile_y when i_plasma_pedestal=0 to set any 0 elements to be slightly above 0, hence avoiding divide by 0's.

[timothy-nunn]

Just to clarify this is what the profile looks like

Obviously, that was the case before except the final point is now at 1e-8 not 0.0

[codecov-commenter]

Codecov Report

❌ Patch coverage is 0% with 2 lines in your changes missing coverage. Please review.
✅ Project coverage is 46.30%. Comparing base (8a4d67c) to head (560284b).
⚠️ Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
process/profiles.py	0.00%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #4038      +/-   ##
==========================================
- Coverage   46.30%   46.30%   -0.01%     
==========================================
  Files         123      123              
  Lines       28961    28962       +1     
==========================================
  Hits        13411    13411              
- Misses      15550    15551       +1     

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[grmtrkngtn]

Did this remove the error for you @timothy-nunn ?

[grmtrkngtn]

This is actually being overwritten by the following code, so the fix isn't applied and the error persists. We should add a return statement after this, then an else or "if physics.variables.i_plasma_pedestal == 1" to ensure the code runs correctly.

[grmtrkngtn]

Please make the adjustment recommended in profiles.py

[grmtrkngtn]

One more thing @timothy-nunn the change is only applied to the ne profile but actually the bug occurs with the te profile, we should apply the same solution there.

[timothy-nunn]

One more thing @timothy-nunn the change is only applied to the ne profile but actually the bug occurs with the te profile, we should apply the same solution there.

Hi @ym1906 thanks for pointing that out. Should be corrected now.

[grmtrkngtn]

Yes, looks good to me now. This fix removes the error when I run the helias_5b example file.