Single Cell RNA Analysis Suite (SCRAS)

SCRAS is implemented in Python3.

Installation

    $> git clone git://github.com/vincent6liu/scras.git
    $> cd scras
    $> sudo -H pip3 install .

To Use

After following the installation steps listed above, the GUI can be invoked using

    $> python3 src/scras/scras_gui.py 

Acknowledgment

SCRAS is implemented based on MAGIC (https://github.com/pkathail/magic)
Clustering is done using PhenoGraph (https://github.com/jacoblevine/PhenoGraph)
Differential expression analysis is done using MAST (https://github.com/RGLab/MAST)