GitHub - ynpan910/Transcriptomics_analyses_scripts: This collects a series of bioinformatics analyses on transcriptomics I have done for different research projects.

Name		Name	Last commit message	Last commit date
Latest commit History 35 Commits
Cosmx_ST_CellChat.R		Cosmx_ST_CellChat.R
VisiumHD_step1_seurat.R		VisiumHD_step1_seurat.R
VisiumHD_step2_SingleCellNet_annotation.R		VisiumHD_step2_SingleCellNet_annotation.R
VisiumHD_step3_scPred_annotation.R		VisiumHD_step3_scPred_annotation.R
VisiumHD_step4_CellChat_CCI.R		VisiumHD_step4_CellChat_CCI.R
Visium_ST_seurat.R		Visium_ST_seurat.R
bulk_step1_Identification of source of variation		bulk_step1_Identification of source of variation
bulk_step2_DEG		bulk_step2_DEG
bulk_step3_WGCNA		bulk_step3_WGCNA
bulk_step4_GSEA		bulk_step4_GSEA
sc_CellChat.R		sc_CellChat.R
sc_TF_inference_pySCENIC_R_Python.R		sc_TF_inference_pySCENIC_R_Python.R
sc_gene_correlation_tests		sc_gene_correlation_tests
sc_trajectory_Monocle2.R		sc_trajectory_Monocle2.R
sc_trajectory_Monocle3.R		sc_trajectory_Monocle3.R