Add artifact removal #60
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C-Achard
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Dec 5, 2023
* Update plugin_convert.py * Update plugin_convert.py * Update plugin_convert.py * Update napari_cellseg3d_m1.yml * Fix memory allocation issue * Add debug info to stats * Add mini-stats test * TEMP Comment out image stats * Revert "TEMP Comment out image stats" This reverts commit fc73e5b. * Disable image deletion * Disable sphericity * Add sphericity * Add *.tiff as valid path everywhere * Fix tests and tif+tiff loading * Fix several test issues and inconsistencies * Update .gitignore * Move pydensecrf back to main repo * Update worker_inference.py * Update worker_inference.py * Update worker_inference.py * Reduce warning spam in stats * Update instance_segmentation.py * Update utils.py * Update instance_segmentation.py * Fix attr error in inference * Add artifact removal (#60) * WIP add artifact removal * Add utils and inference worker artifact removal * Fix issue with layer type in utils * Add better pbar and windowed artifact rem * Refactor results name to be more explicit * Add working pbar to Inference log * Reduce requirements * Fix spheric. test and import checking * Update worker_training.py * Update worker_training.py * macOS Silicon install (#59) * Remove itk temp * Update napari_cellseg3d_m1.yml * Update napari_cellseg3d_m1.yml * Remove duplicate imagecodecs * Update napari_cellseg3d_m1.yml * Remove imagecodecs TEMP * Fixing tests on M1 * Remove erroneous path in test * Update test_utils.py * Update test_utils.py * Changed python to 3.9 for ITK * Docs update * Minor docs tweaks * Update README.md * Update README.md * Update README.md * Update README.md * README and docs update * Labels stats notebook update * mv full plot to better name * Fix attr error in inference
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Adds automated large artifacts removal