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These heavy/fragile ML dependencies are now opt-in rather than required for the base install. Core analysis (DTI, CSD, registration, template building) works with just `pip install kwneuro`; optional tools are available via `pip install kwneuro[hdbet,tractseg,noddi,combat]` or `pip install kwneuro[all]`. Source modules use lazy imports with clear ImportError messages. CI Python matrix bumped from [3.10, 3.12] to [3.10, 3.13]. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Move CONTRIBUTING.md content into docs/developer-guide.md as the canonical source, with a thin redirect left in .github/. Add a script to convert Jupytext notebooks into pre-rendered Markdown tutorial pages for Sphinx. Exclude auto-generated tutorial files from pre-commit hooks. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
sadhana-r
approved these changes
Apr 8, 2026
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Major documentation improvements:
update-notebook-pages.py. The idea is that we would run this to generate markdown files automatically from the notebooks, and then we commit those markdown filesBefore merging this:
update-notebook-pages.pyscripts, since Add downsampling to demo notebooks #131 updates the notebooks in way that we'd like to have reflected on the generated doc pages.Check out the docs! https://kwneuro--134.org.readthedocs.build/en/134/