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8 changes: 3 additions & 5 deletions package/MDAnalysis/analysis/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -52,10 +52,6 @@
contains the often-used
:func:`~MDAnalysis.analysis.distances.distance_array` function.

:mod:`~MDAnalysis.analysis.hbonds`
Analyze hydrogen bonds, including both the per frame results as well
as the dynamic properties and lifetimes.

:mod:`~MDAnalysis.analysis.helanal`
Analysis of helices with the HELANAL_ algorithm.

Expand Down Expand Up @@ -108,6 +104,9 @@
:mod:`~MDAnalysis.analysis.legacy.x3dna` was moved to the
:mod:`MDAnalysis.analysis.legacy` package

.. versionchanged:: 2.0.0
Removed deprecated :mod:`hbonds.hbond_analysis`

"""

__all__ = [
Expand All @@ -117,7 +116,6 @@
'density',
'distances',
'gnm',
'hbonds',
'hydrogenbonds',
'helanal',
'hole',
Expand Down
17 changes: 11 additions & 6 deletions package/MDAnalysis/analysis/hbonds/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -20,14 +20,19 @@
# MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations.
# J. Comput. Chem. 32 (2011), 2319--2327, doi:10.1002/jcc.21787
#
from __future__ import absolute_import

import warning

warnings.warn(
"This module was moved. "
"Please use MDAnalysis.analysis.hydrogenbonds instead.",
category=DeprecationWarning
)

__all__ = [
'HydrogenBondAnalysis',
'HydrogenBondAutoCorrel', 'find_hydrogen_donors',
'HydrogenBondAutoCorrel',
'WaterBridgeAnalysis',
]

from .hbond_analysis import HydrogenBondAnalysis
from .hbond_autocorrel import HydrogenBondAutoCorrel, find_hydrogen_donors
from .wbridge_analysis import WaterBridgeAnalysis
from ..hydrogenbonds import HydrogenBondAutoCorrel, find_hydrogen_donors
from ..hydrogenbonds import WaterBridgeAnalysis
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