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Merged
IAlibay merged 4 commits into from
Sep 23, 2020
Merged

Remove helanal #2929

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ee06a38
remove helanal
lilyminium Sep 2, 2020
13f05b5
update changelog and remove doc references
lilyminium Sep 2, 2020
32b4158
add references
lilyminium Sep 8, 2020
8ac7d01
Merge branch 'develop' into helano
lilyminium Sep 8, 2020
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2 changes: 2 additions & 0 deletions package/CHANGELOG
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Original file line number Diff line number Diff line change
Expand Up @@ -114,6 +114,8 @@ Changes
* Updated Universe creation function signatures to named arguments (Issue #2921)
* The transformation was changed from a function/closure to a class with
`__call__` (Issue #2860, PR #2859)
* deprecated ``analysis.helanal`` module has been removed in favour of
``analysis.helix_analysis`` (PR #2929)

Deprecations

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4 changes: 2 additions & 2 deletions package/MDAnalysis/analysis/__init__.py
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Expand Up @@ -56,7 +56,7 @@
Analyze hydrogen bonds, including both the per frame results as well
as the dynamic properties and lifetimes.

:mod:`~MDAnalysis.analysis.helanal`
:mod:`~MDAnalysis.analysis.helix_analysis`
Analysis of helices with the HELANAL_ algorithm.

:mod:`~MDAnalysis.analysis.hole2`
Expand Down Expand Up @@ -126,7 +126,7 @@
'gnm',
'hbonds',
'hydrogenbonds',
'helanal',
'helix_analysis',
'hole2',
'leaflet',
'msd',
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