Start 2.1.0-dev0

.github/workflows/gh-ci.yaml

@@ -35,7 +35,7 @@ jobs:
         fail-fast: false
         matrix:
           os: [ubuntu-latest, ]
-          python-version: [3.6, 3.7, 3.8, 3.9]
+          python-version: [3.7, 3.8, 3.9]
           run_type: [FULL, ]
           install_hole: [true, ]
           codecov: [true, ]
@@ -46,25 +46,25 @@ jobs:
               run_type: FULL
               install_hole: true
               codecov: true
-            - name: macOS_catalina_py36
+            - name: macOS_catalina_py37
               os: macOS-10.15
-              python-version: 3.6
+              python-version: 3.7
               run_type: FULL
               install_hole: true
               codecov: false
             - name: minimal-ubuntu
               os: ubuntu-latest
-              python-version: 3.6
+              python-version: 3.7
               run_type: MIN
               install_hole: false
               codecov: true
             - name: numpy_min
               os: ubuntu-latest
-              python-version: 3.6
+              python-version: 3.7
               run_type: FULL
               install_hole: false
               codecov: false
-              numpy: numpy=1.16.0
+              numpy: numpy=1.18.1
             - name: asv_check
               os: ubuntu-latest
               python-version: 3.7

maintainer/conda/MDAnalysis/meta.yaml

@@ -1,7 +1,7 @@
 package:
   name: mdanalysis
   # This has to be changed after a release
-  version: "2.0.0-dev0"
+  version: "2.1.0-dev0"
 
 source:
    git_url: https://github.com/MDAnalysis/mdanalysis

package/CHANGELOG

@@ -13,7 +13,22 @@ The rules for this file:
   * release numbers follow "Semantic Versioning" http://semver.org
 
 ------------------------------------------------------------------------------
-??/??/?? tylerjereddy, richardjgowers, IAlibay, hmacdope, orbeckst, cbouy,
+??/??/?? IAlibay
+
+ * 2.1.0
+
+Fixes
+
+Enhancements
+
+Changes
+  * Dropped python 3.6 support and raised minimum numpy version to 1.18.0
+    (NEP29)
+
+Deprecations
+
+
+08/21/21 tylerjereddy, richardjgowers, IAlibay, hmacdope, orbeckst, cbouy,
          lilyminium, daveminh, jbarnoud, yuxuanzhuang, VOD555, ianmkenney,
          calcraven，xiki-tempula, mieczyslaw, manuel.nuno.melo, PicoCentauri,
          hanatok, rmeli, aditya-kamath, tirkarthi, LeonardoBarneschi, hejamu,

package/MDAnalysis/core/universe.py

@@ -68,21 +68,9 @@
 # trigger an MPI warning because importing the uuid module triggers a call to
 # os.fork(). This happens if MPI_Init() has been called prior to importing
 # MDAnalysis. The problem is actually caused by the uuid module and not by
-# MDAnalysis itself. Python 3.7 fixes the problem. However, for Python < 3.7,
-# the uuid module works perfectly fine with os.fork() disabled during import.
-# A clean solution is therefore simply to disable os.fork() prior to importing
-# the uuid module and to re-enable it afterwards.
+# MDAnalysis itself. Python 3.7 fixes the problem.
 import os
-
-# Windows doesn't have os.fork so can ignore
-# the issue for that platform
-if sys.version_info >= (3, 7) or os.name == 'nt':
-    import uuid
-else:
-    _os_dot_fork, os.fork = os.fork, None
-    import uuid
-    os.fork = _os_dot_fork
-    del _os_dot_fork
+import uuid
 
 from .. import _TOPOLOGY_ATTRS, _PARSERS
 from ..exceptions import NoDataError

package/MDAnalysis/version.py

@@ -67,4 +67,4 @@
 # e.g. with lib.log
 
 #: Release of MDAnalysis as a string, using `semantic versioning`_.
-__version__ = "2.0.0-dev0"  # NOTE: keep in sync with RELEASE in setup.py
+__version__ = "2.1.0-dev0"  # NOTE: keep in sync with RELEASE in setup.py

package/setup.py

@@ -73,7 +73,7 @@
     from commands import getoutput
 
 # NOTE: keep in sync with MDAnalysis.__version__ in version.py
-RELEASE = "2.0.0-dev0"
+RELEASE = "2.1.0-dev0"
 
 is_release = 'dev' not in RELEASE
 
@@ -574,7 +574,6 @@ def long_description(readme):
         'Operating System :: Microsoft :: Windows ',
         'Programming Language :: Python',
         'Programming Language :: Python :: 3',
-        'Programming Language :: Python :: 3.6',
         'Programming Language :: Python :: 3.7',
         'Programming Language :: Python :: 3.8',
         'Programming Language :: Python :: 3.9',
@@ -588,7 +587,7 @@ def long_description(readme):
     exts, cythonfiles = extensions(config)
 
     install_requires = [
-          'numpy>=1.16.0',
+          'numpy>=1.18.0',
           'biopython>=1.71',
           'networkx>=1.0',
           'GridDataFormats>=0.4.0',
@@ -635,11 +634,11 @@ def long_description(readme):
                         ],
           },
           ext_modules=exts,
-          python_requires='>=3.6',
+          python_requires='>=3.7',
           # all standard requirements are available through PyPi and
           # typically can be installed without difficulties through setuptools
           setup_requires=[
-              'numpy>=1.16.0',
+              'numpy>=1.18.0',
           ],
           install_requires=install_requires,
           # extras can be difficult to install through setuptools and/or

testsuite/MDAnalysisTests/__init__.py

@@ -97,7 +97,7 @@
 logger = logging.getLogger("MDAnalysisTests.__init__")
 
 # keep in sync with RELEASE in setup.py
-__version__ = "2.0.0-dev0"
+__version__ = "2.1.0-dev0"
 
 
 # Do NOT import MDAnalysis at this level. Tests should do it themselves.

testsuite/setup.py

@@ -87,7 +87,7 @@ def run(self):
 
 if __name__ == '__main__':
     # this must be in-sync with MDAnalysis
-    RELEASE = "2.0.0-dev0"
+    RELEASE = "2.1.0-dev0"
     with open("README") as summary:
         LONG_DESCRIPTION = summary.read()
 
@@ -101,7 +101,6 @@ def run(self):
         'Operating System :: Microsoft :: Windows ',
         'Programming Language :: Python',
         'Programming Language :: Python :: 3',
-        'Programming Language :: Python :: 3.6',
         'Programming Language :: Python :: 3.7',
         'Programming Language :: Python :: 3.8',
         'Programming Language :: Python :: 3.9',