Model manipulation

[jonc125]

As of Sept 16 2019 I (@skeating ) have broken up the remaining issues here into smaller issues:
#80 #81 #82 #83 #84
Any unchecked item below reference the issue that now also contains it.

Initial thoughts, to be expanded...

• Parsing of simple mathematical systems (cf Sample CellML files for testing #22) - Issues copied to Parsing of simple mathematical models - from Model Manipulation #80
• Parsing of realistic models - Issues copied to Parsing of realsitic models - from Model manipulation #82
• Analysing systems of equations - Issues copied to Analysing systems of equations - from Model manipulation #81
• Interface needed for model manipulation - Issues copied to Interface for Model manipulation #83
• Interface needed for code generation - Issues copied to Interface for code generation - from Model manipulation #84

Tasks:

• @jonc125 to create initial sample CellML files - see Sample CellML files for testing #22

[jonc125]

The easiest way to test the parsing parts of this is probably to simulate the parsed models (cf #2) which potentially also requires the code generation aspects. Need to discuss (tomorrow!) how much overlap/integration we want between these tools. See also ModellingWebLab/project_issues#12 and discussions about Melodee.

[jonc125]

@tamuri can you tick off in the description the items now done?

[tamuri]

ticked off a few more items