Skip to content

tiny-count: bugfixes and improvements in diagnostic outputs#300

Merged
taimontgomery merged 4 commits intomasterfrom
issue-299
Apr 8, 2023
Merged

tiny-count: bugfixes and improvements in diagnostic outputs#300
taimontgomery merged 4 commits intomasterfrom
issue-299

Conversation

@AlexTate
Copy link
Member

@AlexTate AlexTate commented Apr 5, 2023

  • Classifier-related bugs have been fixed
  • Alignment tables are now produced as CSVs rather than TSVs
  • Alignment tables now include the alignment's chromosome as well as the number of feature candidates that were available for selection at the beginning of Stage 2. Strand is also represented as +/-/. rather than True/False/None.
  • Output files have been renamed:
    • ...aln_table.txt ---> ...alignment_table.csv
    • alignment_diags.csv ---> assignment_diags.csv

Please close PR #298 first
Closes #299

AlexTate added 3 commits April 4, 2023 18:20
- Classifier-related bugs have been fixed
- Alignment tables are now produced as CSVs rather than TSVs
- Alignment tables now include the alignment's chromosome as well as the number of feature candidates that were available for Stage 2 selection
@AlexTate AlexTate requested a review from taimontgomery April 5, 2023 01:28
@taimontgomery
Copy link
Collaborator

Tested on ram1 data.

@taimontgomery taimontgomery merged commit 39e2263 into master Apr 8, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

tiny-count: update diagnostic outputs

2 participants