merge master #21
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merge master #21
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* [DLMED] fix TorchScript issue in AHNet Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add test cases Signed-off-by: Nic Ma <nma@nvidia.com>
* Fix for device config script Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
* [DLMED] add IterationHandler refer to the EpochHandler in ignite Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix the multi-gpu issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix distributed tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
Stop build if the tag format is wrong Signed-off-by: Isaac Yang <isaacy@nvidia.com>
Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>
Co-authored-by: Wenqi Li <wenqil@nvidia.com>
learning rate finder and corresponding test
* test new action for quick test; add temp tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * testing action Signed-off-by: Wenqi Li <wenqil@nvidia.com> * remove temp test Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
* [DLMED] add more Events Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add 3 Events Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] add tests Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
* 1442 use pull-grid only for above linear interpolation Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
…1497) * [DLMED] add IterationHandler refer to the EpochHandler in ignite Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix the multi-gpu issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix distributed tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add engine to metrics Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] share metric details in engine Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add metrics report Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add average value to report Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add summary report Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add docs Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] add unit tests and distributed tests Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove from min_tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove useless var Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add skip flag Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add dist tests Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance some unit tests Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] remove from min_tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] change to standlone APIs to write files Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] add file type check Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add output_type arg Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] develop standlone API Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 error Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix min test Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>
* fixes #1526 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes Useless inheritance from object https://deepsource.io/gh/Project-MONAI/MONAI/issue/PYL-R0205 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes https://github.com/Project-MONAI/MONAI/pull/1527/checks?check_run_id=1794062607#step:10:7763 Signed-off-by: Wenqi Li <wenqil@nvidia.com>
* numpy dtype alias Signed-off-by: Wenqi Li <wenqil@nvidia.com> * is_tensor => isinstance Signed-off-by: Wenqi Li <wenqil@nvidia.com> * type of dtype Signed-off-by: Wenqi Li <wenqil@nvidia.com> * relaxes some typing constraints Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes unit tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on the comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes docstring typos Signed-off-by: Wenqi Li <wenqil@nvidia.com>
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Fixes # .
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./runtests.sh --codeformat --coverage../runtests.sh --quick.make htmlcommand in thedocs/folder.