bumping python versions to 3.11-13

[atravitz]

resolves #1028
blocked by #1374 and OpenFreeEnergy/gufe#576 OpenFreeEnergy/gufe#577

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[codecov]

Codecov Report

❌ Patch coverage is 92.59259% with 2 lines in your changes missing coverage. Please review.
✅ Project coverage is 93.20%. Comparing base (255ac7f) to head (648473b).
⚠️ Report is 125 commits behind head on main.

Files with missing lines	Patch %	Lines
...s/protocols/openmm_rfe/test_hybrid_top_protocol.py	0.00%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1373      +/-   ##
==========================================
- Coverage   95.11%   93.20%   -1.92%     
==========================================
  Files         165      165              
  Lines       12389    12389              
==========================================
- Hits        11784    11547     -237     
- Misses        605      842     +237     

Flag	Coverage Δ
fast-tests	93.20% <92.59%> (?)
slow-tests	?

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[IAlibay]

See OpenFreeEnergy/gufe#576 and relevant upstream openff-toolkit-feedstock issue.

[atravitz]

currently blocked by conda-forge/citeproc-py-feedstock#14

[IAlibay]

Also need to update the docs environment file.

[mikemhenry]

This is clear! I was going to add a bit about if you want to use the openeye toolkit with openfe, you need to install python 3.12 or something but I think this makes it pretty clear and saves us from having to make some recommendation.

[IAlibay]

I don't mind this being here, but I honestly wouldn't bother. OpenEye functionality is limited to elf10, and we don't advertise it in our docs.

[mikemhenry]

Will probably need to make the same changes in our other repos as well.

[github-actions]

No API break detected ✅

[IAlibay]

As mentioned elsewhere, the fact that we can't do python 3.13 w/ oechem isn't a big deal since it doesn't affect anything else but the one partial charge assignment option. Being too loud about it might end up confusing our users (who expect to not have openeye as a dependency).