Test biosimulators compatibility for a BioModels

[stellaprins]

All biomodels are SBML compatible but not all have a SED-ML file.

• Make compatibility results table for a model that has a valid SED-ML file
• change SED-ML file values to 100 (max x, instead of 10)
• try to replicate figure https://www.ebi.ac.uk/biomodels/BIOMD0000000001#Curation

BIOMD0000000138

• do same for BIOMD0000000138

PR #84

[stellaprins]

Biomodels (dopamine example):

• change time course to 3000 ms
• change dt (see curated example).
• change the recorded value to v (it is now c for calcium, instead of v)

  SBMLShowcase/BioModels/BIOMD0000000138/BIOMD0000000138_url.sedml

  Line 421 in a8bf029

  <curve id="autogen_curve_task1_c" name="c" logX="false" xDataReference="auto_time_for_task1" logY="false" yDataReference="auto_dg_for_task1_c"/>

[stellaprins]

Here’s the Markdown code with all images resized to 50% of their original width:

Curated EBI Example

Amici

Copasi

Pysces

Tellurium

VCell

[stellaprins]

BIOMD0000000138

Curated EBI Example

Copasi (c)

Copasi (v)