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Feat 57 biomodels#84

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stellaprins merged 16 commits intodevelopmentfrom
feat-57-biomodels
Nov 25, 2024
Merged

Feat 57 biomodels#84
stellaprins merged 16 commits intodevelopmentfrom
feat-57-biomodels

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@stellaprins stellaprins commented Nov 14, 2024

Issue #57

  • Add results tables for BIOMD0000000138 and BIOMD0000000001
  • SED-ML files are tweeked to replicated curated BioModels figures (e.g. log scale, end time, plotted curves)

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@robertvi I've updated the BIOMD0000000001 plots and results table (and increased the max_wait_time to 600 seconds so that there is enough time for Amici to run) but I think this should be ready now to be merged into dev

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When the compatibility column says XFAIL but the message says "the filetype suggests it maybe compatible" it is a bit unclear then why this is an expected fail. If the script knows the program cannot handle this type of model should the message state this clearly perhaps?

This was referenced Nov 25, 2024
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leaving the UNSURE versus XFAIL issue until another PR

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When the compatibility column says XFAIL but the message says "the filetype suggests it maybe compatible" it is a bit unclear then why this is an expected fail. If the script knows the program cannot handle this type of model should the message state this clearly perhaps?

Good point. #89 looks at the compatibility message, will address this comment there.

@stellaprins stellaprins merged commit bfc5f39 into development Nov 25, 2024
@stellaprins stellaprins deleted the feat-57-biomodels branch December 2, 2024 16:50
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