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Feat 87 2 test more biomodels#90

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stellaprins merged 28 commits intodevelopmentfrom
feat-87-2-test-more-biomodels
Dec 2, 2024
Merged

Feat 87 2 test more biomodels#90
stellaprins merged 28 commits intodevelopmentfrom
feat-87-2-test-more-biomodels

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@stellaprins stellaprins commented Nov 21, 2024

Adds

Removes spaces from omex filenames before mounting the files to the docker container

Addresses issue #87

Merge after #84

@stellaprins stellaprins self-assigned this Nov 21, 2024
@stellaprins stellaprins marked this pull request as ready for review November 21, 2024 16:10
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robertvi commented Dec 2, 2024

If the spaces in the filename are causing problems due to being run as part of a shell script in our code, then it might be worth also trying to wrap the filename parameters to the shell script in double quotes to make them robust to spaces. But if the problem is inside a function we didn't write them perhaps bug report to the author's GH could be possible?

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Thanks, I've added the quotes, a bug fix (temp SED-ML file handling in add_xmlns_sbml_attribute and add…
7210ece), and some minor changes to format of the XFAIL message.

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Looks good

@stellaprins stellaprins merged commit 29b6b9b into development Dec 2, 2024
@stellaprins stellaprins deleted the feat-87-2-test-more-biomodels branch December 2, 2024 16:49
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