OpenSourceBrain · stellaprins · Oct 28, 2024 · Oct 9, 2024 · Oct 9, 2024 · Oct 9, 2024
diff --git a/SBML/tests/d1_plots_local/amici_d1.pdf b/SBML/tests/d1_plots_local/amici_d1.pdf
diff --git a/SBML/tests/d1_plots_local/bionetgen_d1.pdf b/SBML/tests/d1_plots_local/bionetgen_d1.pdf
diff --git a/SBML/tests/d1_plots_local/boolnet_d1.pdf b/SBML/tests/d1_plots_local/boolnet_d1.pdf
diff --git a/SBML/tests/d1_plots_local/cbmpy_d1.pdf b/SBML/tests/d1_plots_local/cbmpy_d1.pdf
diff --git a/SBML/tests/d1_plots_local/cobrapy_d1.pdf b/SBML/tests/d1_plots_local/cobrapy_d1.pdf
diff --git a/SBML/tests/d1_plots_local/copasi_d1.pdf b/SBML/tests/d1_plots_local/copasi_d1.pdf
diff --git a/SBML/tests/d1_plots_local/gillespy2_d1.pdf b/SBML/tests/d1_plots_local/gillespy2_d1.pdf
diff --git a/SBML/tests/d1_plots_local/ginsim_d1.pdf b/SBML/tests/d1_plots_local/ginsim_d1.pdf
diff --git a/SBML/tests/d1_plots_local/libsbmlsim_d1.pdf b/SBML/tests/d1_plots_local/libsbmlsim_d1.pdf
diff --git a/SBML/tests/d1_plots_local/masspy_d1.pdf b/SBML/tests/d1_plots_local/masspy_d1.pdf
diff --git a/SBML/tests/d1_plots_local/pysces_d1.pdf b/SBML/tests/d1_plots_local/pysces_d1.pdf
diff --git a/SBML/tests/d1_plots_local/rbapy_d1.pdf b/SBML/tests/d1_plots_local/rbapy_d1.pdf
diff --git a/SBML/tests/d1_plots_local/tellurium_d1.pdf b/SBML/tests/d1_plots_local/tellurium_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/amici_d1.pdf b/SBML/tests/d1_plots_remote/amici_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/bionetgen_d1.pdf b/SBML/tests/d1_plots_remote/bionetgen_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/boolnet_d1.pdf b/SBML/tests/d1_plots_remote/boolnet_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/cbmpy_d1.pdf b/SBML/tests/d1_plots_remote/cbmpy_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/cobrapy_d1.pdf b/SBML/tests/d1_plots_remote/cobrapy_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/copasi_d1.pdf b/SBML/tests/d1_plots_remote/copasi_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/gillespy2_d1.pdf b/SBML/tests/d1_plots_remote/gillespy2_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/ginsim_d1.pdf b/SBML/tests/d1_plots_remote/ginsim_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/libsbmlsim_d1.pdf b/SBML/tests/d1_plots_remote/libsbmlsim_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/masspy_d1.pdf b/SBML/tests/d1_plots_remote/masspy_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/pysces_d1.pdf b/SBML/tests/d1_plots_remote/pysces_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/rbapy_d1.pdf b/SBML/tests/d1_plots_remote/rbapy_d1.pdf
diff --git a/SBML/tests/d1_plots_remote/tellurium_d1.pdf b/SBML/tests/d1_plots_remote/tellurium_d1.pdf
diff --git a/SBML/tests/results_compatibility_biosimulators.md b/SBML/tests/results_compatibility_biosimulators.md
diff --git a/SBML/tests/test_biosimulators_local.py b/SBML/tests/test_biosimulators_local.py
@@ -12,9 +12,6 @@
 import utils
 import argparse
 
-engines = utils.engines
-types_dict = utils.types_dict
-
 # Save the current working directory
 cwd = os.getcwd()
 print('Current working directory:', cwd)
@@ -44,5 +41,5 @@
 results_local = utils.run_biosimulators_locally(sedml_file_name=sedml_file_name, 
                                     sbml_file_name=sbml_file_name,
                                     d1_plots_local_dir=d1_plots_local_dir, 
-                                    engines=engines, test_folder=test_folder)
+                                    test_folder=test_folder)
 
diff --git a/SBML/tests/test_biosimulators_remote.py b/SBML/tests/test_biosimulators_remote.py
@@ -12,9 +12,6 @@
 import utils
 import argparse
 
-engines = utils.engines
-types_dict = utils.types_dict
-
 # Save the current working directory
 cwd = os.getcwd()
 print('Current working directory:', cwd)
@@ -44,5 +41,5 @@
 results_remote = utils.run_biosimulators_remotely(sedml_file_name=sedml_file_name, 
                                     sbml_file_name=sbml_file_name,
                                     d1_plots_remote_dir=d1_plots_remote_dir, 
-                                    engines=engines, test_folder=test_folder)
+                                    test_folder=test_folder)
 
diff --git a/SBML/tests/test_compatibility_biosimulators.py b/SBML/tests/test_compatibility_biosimulators.py
@@ -12,8 +12,8 @@
 import utils
 import argparse
 
-engines = utils.engines
-types_dict = utils.types_dict
+engines = utils.ENGINES
+types_dict = utils.TYPES
 
 # Save the current working directory
 cwd = os.getcwd()
@@ -46,4 +46,4 @@
                                  sbml_file_name,
                                  d1_plots_remote_dir, 
                                  d1_plots_local_dir,
-                                 engines=engines, test_folder=test_folder)
+                                 test_folder=test_folder)
diff --git a/SBML/tests/test_creation_combined_results_table.py b/SBML/tests/test_creation_combined_results_table.py
@@ -4,7 +4,7 @@
 import utils
 import argparse
 
-engines = utils.engines
+engines = utils.ENGINES
 
 # Save the current working directory
 cwd = os.getcwd()
@@ -40,7 +40,6 @@
                                   sbml_file_name, 
                                   d1_plots_local_dir, 
                                   d1_plots_remote_dir,
-                                  engines=engines, 
                                   test_folder='tests')
 
 print(results_table)

diff --git a/utils/__init__.py b/utils/__init__.py