39 sliding window inference #52
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Hi @IsaacYangSLA , I found the "build" CI test failed because runner can't find GPU driver. |
ericspod
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Feb 6, 2020
madil90
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Feb 7, 2020
madil90
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Feb 7, 2020
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Hi All,
This PR implemented the common inference logic of sliding window method #39 .
Also added image padder transform(pad to end).
Could you please help review it?
Thanks in advance.
I already added unit tests for them and verified locally:
_test_conv1 (tests.test_convolutions.TestConvolution2D) ... ok
test_conv_only1 (tests.test_convolutions.TestConvolution2D) ... ok
test_dilation1 (tests.test_convolutions.TestConvolution2D) ... ok
test_dropout1 (tests.test_convolutions.TestConvolution2D) ... ok
test_stride1 (tests.test_convolutions.TestConvolution2D) ... ok
test_transpose1 (tests.test_convolutions.TestConvolution2D) ... ok
test_transpose2 (tests.test_convolutions.TestConvolution2D) ... ok
test_conv_only1 (tests.test_convolutions.TestResidualUnit2D) ... ok
test_dilation1 (tests.test_convolutions.TestResidualUnit2D) ... ok
test_dropout1 (tests.test_convolutions.TestResidualUnit2D) ... ok
test_stride1 (tests.test_convolutions.TestResidualUnit2D) ... ok
test_shape_0 (tests.test_dice_loss.TestDiceLoss) ... ok
test_shape_1 (tests.test_dice_loss.TestDiceLoss) ... ok
test_image_end_pad_shape_0 (tests.test_image_end_padder.TestImageEndPadder) ... ok
test_image_normalizer_default (tests.test_intensity_normalizer.IntensityNormTestCase) ... ok
test_sliding_window_default (tests.test_sliding_window_inference.TestSlidingWindowInference) ... ok
test_shape_0 (tests.test_unet.TestUNET) ... ok
test_shape_1 (tests.test_unet.TestUNET) ... ok
test_shape_2 (tests.test_unet.TestUNET) ... ok
Ran 19 tests in 5.266s
OK_
The CI test error is because runner can't find GPU:
Found no NVIDIA driver on your system. Please check that you have an NVIDIA GPU and installed a driver
Need @IsaacYangSLA to help on CI config.
Thanks.