Describe the bug
Unexpected keyword argument 'access_conditions' when importing zenodo dataset in Jupyterlab terminal
Link to project
https://renkulab.io/projects/ACE-ASAID/seawater_stable_oxygen_isotopes/environments
This is private but I can add a user if need be.
To Reproduce
Steps to reproduce the behavior:
- Start new environment in renkulab
- Open terminal in jupyterlab
renku dataset import 10.5281/zenodo.1494915
Expected behavior
A clear and concise description of what you expected to happen.
Screenshots and/or execution output
Please select an action by typing its name (open, print, ignore) [ignore]: ignore
Traceback (most recent call last):
File "/home/jovyan/.local/bin/renku", line 8, in
sys.exit(cli())
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 764, in call
return self.main(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/exception_handler.py", line 128, in main
self._handle_github()
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/exception_handler.py", line 175, in _handle_github
getattr(self, 'process' + value)()
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/exception_handler.py", line 119, in main
result = super().main(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/exception_handler.py", line 90, in main
return super().main(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 717, in main
rv = self.invoke(ctx)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
return process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 956, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 555, in invoke
return callback(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/dataset.py", line 644, in import
download_file_fn=download_file_with_progress
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/client.py", line 89, in new_func
result = ctx.invoke(method, client, *args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 555, in invoke
return callback(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/dataset.py", line 430, in import_dataset
record = provider.find_record(uri)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/providers/zenodo.py", line 514, in find_record
return self.find_record_by_doi(uri)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/providers/zenodo.py", line 521, in find_record_by_doi
return self.get_record(ZenodoProvider.record_id(doi.url))
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/providers/zenodo.py", line 527, in get_record
return ZenodoRecordSerializer(**response.json(), zenodo=self, uri=uri)
File "", line 9, in init
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/providers/zenodo.py", line 160, in _metadata_converter
return ZenodoMetadataSerializer(**data)
TypeError: init() got an unexpected keyword argument 'access_conditions'
Run environment (please complete the following information):
Renku version: 0.8.2
OS: Linux (#1 SMP Mon Oct 22 10:40:32 EDT 2018)
Python: 3.7.3
Renkulab: Jupyterlab
Browser: Firefox
Additional context
- The following was displayed when creating the environment: Docker Image not available
The base image will be used instead. This may work fine, but it may lead to unexpected errors.
Describe the bug
Unexpected keyword argument 'access_conditions' when importing zenodo dataset in Jupyterlab terminal
Link to project
https://renkulab.io/projects/ACE-ASAID/seawater_stable_oxygen_isotopes/environments
This is private but I can add a user if need be.
To Reproduce
Steps to reproduce the behavior:
renku dataset import 10.5281/zenodo.1494915Expected behavior
A clear and concise description of what you expected to happen.
Screenshots and/or execution output
Please select an action by typing its name (open, print, ignore) [ignore]: ignore
Traceback (most recent call last):
File "/home/jovyan/.local/bin/renku", line 8, in
sys.exit(cli())
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 764, in call
return self.main(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/exception_handler.py", line 128, in main
self._handle_github()
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/exception_handler.py", line 175, in _handle_github
getattr(self, 'process' + value)()
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/exception_handler.py", line 119, in main
result = super().main(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/exception_handler.py", line 90, in main
return super().main(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 717, in main
rv = self.invoke(ctx)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
return process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 956, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 555, in invoke
return callback(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/cli/dataset.py", line 644, in import
download_file_fn=download_file_with_progress
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/client.py", line 89, in new_func
result = ctx.invoke(method, client, *args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/click/core.py", line 555, in invoke
return callback(*args, **kwargs)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/dataset.py", line 430, in import_dataset
record = provider.find_record(uri)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/providers/zenodo.py", line 514, in find_record
return self.find_record_by_doi(uri)
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/providers/zenodo.py", line 521, in find_record_by_doi
return self.get_record(ZenodoProvider.record_id(doi.url))
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/providers/zenodo.py", line 527, in get_record
return ZenodoRecordSerializer(**response.json(), zenodo=self, uri=uri)
File "", line 9, in init
File "/home/jovyan/.local/pipx/venvs/renku/lib/python3.7/site-packages/renku/core/commands/providers/zenodo.py", line 160, in _metadata_converter
return ZenodoMetadataSerializer(**data)
TypeError: init() got an unexpected keyword argument 'access_conditions'
Run environment (please complete the following information):
Renku version: 0.8.2
OS: Linux (#1 SMP Mon Oct 22 10:40:32 EDT 2018)
Python: 3.7.3
Renkulab: Jupyterlab
Browser: Firefox
Additional context
The base image will be used instead. This may work fine, but it may lead to unexpected errors.