Mice working#136
Merged
FerriolCalvet merged 27 commits into119-add-positive-selection-explanatory-plotsfrom Aug 9, 2024
Merged
Mice working#136FerriolCalvet merged 27 commits into119-add-positive-selection-explanatory-plotsfrom
FerriolCalvet merged 27 commits into119-add-positive-selection-explanatory-plotsfrom
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…atory-plots add fixes
- fix bug created by previous commit
- add parameters in nextflow config - add parameters in modules
…atory-plots Add first version of positive selection side plots + nextflow version to 24.04 Missing implementation of generating the different plots individually and not requiring all the information for generating single plots
Add option for custom gene groups in omega
- user can provide a custom BED file to compute depths - focusing the depths on a region restricts everything
- add a new parameter to nextflow config - update the module script accordingly
Add option to restrict all analysis to custom BED file
- testing pending
- ensure "global" panels are value channels
Update the scripts to handle NAs in mutations
- update gene_groups as appropriate - add parameters to nextflow.config - add parameters to nextflow_schema
Add hotspots to mice
- add computation of mm39 trinucleotide counts - add more details to the mice.config
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