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- add globalloc param - update omega subworkflow for running globalloc with all_samples synonymous - update omega preprocess module - improve modules.config4 omega - change omega output directory - increase cpu_requirements of ensembl vep 4 panel
- choose between using only the canonical transcript or all transcripts to build the panels
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This is a new functionality of omega to fill the 0s in the genes with no synonymous mutations.
Tested in bladder.
Merging this PR will close #87