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dependabot merged 1 commit into from
Sep 30, 2025
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Bump the python-packages group with 6 updates #368

dependabot merged 1 commit into from
Sep 30, 2025

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Bumps the python-packages group with 6 updates:

Package From To
duckdb 1.3.2 1.4.0
parsl 2025.9.8 2025.9.22
pycytominer 1.2.4 1.3.0
botocore 1.40.30 1.40.41
jupyterlab 4.4.7 4.4.9
black 25.1.0 25.9.0

Updates duckdb from 1.3.2 to 1.4.0

Commits
  • 3d07d49 submodule at v1.4.0
  • d7df331 [Dev] Add py::is_operator() where appropriate for the DuckDBPyExpression ...
  • 864f40d Merge branch 'v1.4-andium' into pyexpression_is_operator
  • 5535d76 Make sure we set CIBW_ENVIRONMENT using bash or Windows will not see it
  • 88ec667 Bumped submodule
  • d202b0c [DBAPI2.0] Fix the description attribute (#43)
  • bf9b439 Detect execution errors earlier, avoiding the unhelpful "attempting to execut...
  • 2d9dffa Merge branch 'v1.4-andium' into throw_error_explicitly
  • 55dfa2c Bumped submodule
  • eff31ec add 'py::is_operator()' where appropriate
  • Additional commits viewable in compare view

Updates parsl from 2025.9.8 to 2025.9.22

Commits

Updates pycytominer from 1.2.4 to 1.3.0

Release notes

Sourced from pycytominer's releases.

v1.3.0 (2025-09-16)

What's Changed

Full Changelog: cytomining/pycytominer@v1.2.4...v1.3.0

Changelog

Sourced from pycytominer's changelog.

v1.3.0 (2025-09-16)

Detailed release notes

Feat

  • Enable anndata input and output (#573)

Refactor

  • Add type hints for all production code (#580)

Build

  • deps: various dependency updates automated by dependabot

CI

  • Decrease "small" pytest testing duration time (#579)
Commits
  • c56db7e bump: version 1.2.4 -> 1.3.0 (#581)
  • 8a87aa6 Add type hints for all production code (#580)
  • d2b136a Decrease "small" pytest testing duration time (#579)
  • 8b7d483 Enable anndata input and output (#573)
  • ab809c4 build(deps): bump actions/setup-python from 5 to 6 in /.github/actions/setup-...
  • f3fa5be build(deps-dev): bump types-openpyxl (#572)
  • 4114337 build(deps): bump sqlalchemy from 2.0.42 to 2.0.43 (#569)
  • 823ee83 build(deps): bump pandas from 2.3.1 to 2.3.2 (#570)
  • edfe7d2 build(deps): bump the python-packages group with 5 updates (#571)
  • f916ec5 build(deps): bump actions/checkout from 4 to 5 (#568)
  • Additional commits viewable in compare view

Updates botocore from 1.40.30 to 1.40.41

Commits

Updates jupyterlab from 4.4.7 to 4.4.9

Release notes

Sourced from jupyterlab's releases.

v4.4.9

4.4.9

(Full Changelog)

Bugs fixed

Contributors to this release

(GitHub contributors page for this release)

@​jupyterlab-probot | @​krassowski | @​martinRenou | @​meeseeksmachine

v4.4.8

4.4.8

(Full Changelog)

Bugs fixed

Maintenance and upkeep improvements

Documentation improvements

Contributors to this release

(GitHub contributors page for this release)

@​brichet | @​github-actions | @​HaudinFlorence | @​jtpio | @​jupyterlab-probot | @​krassowski | @​martinRenou | @​meeseeksmachine | @​Meriem-BenIsmail | @​williamstein

Commits

Updates black from 25.1.0 to 25.9.0

Release notes

Sourced from black's releases.

25.9.0

Highlights

  • Remove support for pre-python 3.7 await/async as soft keywords/variable names (#4676)

Stable style

  • Fix crash while formatting a long del statement containing tuples (#4628)
  • Fix crash while formatting expressions using the walrus operator in complex with statements (#4630)
  • Handle # fmt: skip followed by a comment at the end of file (#4635)
  • Fix crash when a tuple appears in the as clause of a with statement (#4634)
  • Fix crash when tuple is used as a context manager inside a with statement (#4646)
  • Fix crash when formatting a \ followed by a \r followed by a comment (#4663)
  • Fix crash on a \\r\n (#4673)
  • Fix crash on await ... (where ... is a literal Ellipsis) (#4676)
  • Fix crash on parenthesized expression inside a type parameter bound (#4684)
  • Fix crash when using line ranges excluding indented single line decorated items (#4670)

Preview style

  • Fix a bug where one-liner functions/conditionals marked with # fmt: skip would still be formatted (#4552)
  • Improve multiline_string_handling with ternaries and dictionaries (#4657)
  • Fix a bug where string_processing would not split f-strings directly after expressions (#4680)
  • Wrap the in clause of comprehensions across lines if necessary (#4699)
  • Remove parentheses around multiple exception types in except and except* without as. (#4720)
  • Add \r style newlines to the potential newlines to normalize file newlines both from and to (#4710)

Parser

  • Rewrite tokenizer to improve performance and compliance (#4536)
  • Fix bug where certain unusual expressions (e.g., lambdas) were not accepted in type parameter bounds and defaults. (#4602)

Performance

  • Avoid using an extra process when running with only one worker (#4734)

Integrations

  • Fix the version check in the vim file to reject Python 3.8 (#4567)
  • Enhance GitHub Action psf/black to read Black version from an additional section in pyproject.toml: [project.dependency-groups] (#4606)
  • Build gallery docker image with python3-slim and reduce image size (#4686)

... (truncated)

Changelog

Sourced from black's changelog.

25.9.0

Highlights

  • Remove support for pre-python 3.7 await/async as soft keywords/variable names (#4676)

Stable style

  • Fix crash while formatting a long del statement containing tuples (#4628)
  • Fix crash while formatting expressions using the walrus operator in complex with statements (#4630)
  • Handle # fmt: skip followed by a comment at the end of file (#4635)
  • Fix crash when a tuple appears in the as clause of a with statement (#4634)
  • Fix crash when tuple is used as a context manager inside a with statement (#4646)
  • Fix crash when formatting a \ followed by a \r followed by a comment (#4663)
  • Fix crash on a \\r\n (#4673)
  • Fix crash on await ... (where ... is a literal Ellipsis) (#4676)
  • Fix crash on parenthesized expression inside a type parameter bound (#4684)
  • Fix crash when using line ranges excluding indented single line decorated items (#4670)

Preview style

  • Fix a bug where one-liner functions/conditionals marked with # fmt: skip would still be formatted (#4552)
  • Improve multiline_string_handling with ternaries and dictionaries (#4657)
  • Fix a bug where string_processing would not split f-strings directly after expressions (#4680)
  • Wrap the in clause of comprehensions across lines if necessary (#4699)
  • Remove parentheses around multiple exception types in except and except* without as. (#4720)
  • Add \r style newlines to the potential newlines to normalize file newlines both from and to (#4710)

Parser

  • Rewrite tokenizer to improve performance and compliance (#4536)
  • Fix bug where certain unusual expressions (e.g., lambdas) were not accepted in type parameter bounds and defaults. (#4602)

Performance

  • Avoid using an extra process when running with only one worker (#4734)

Integrations

  • Fix the version check in the vim file to reject Python 3.8 (#4567)
  • Enhance GitHub Action psf/black to read Black version from an additional section in pyproject.toml: [project.dependency-groups] (#4606)

... (truncated)

Commits

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Sep 29, 2025
@dependabot dependabot bot mentioned this pull request Sep 29, 2025
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@d33bs d33bs mentioned this pull request Sep 30, 2025
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d33bs commented Sep 30, 2025

@dependabot rebase

@dependabot
Bump the python-packages group with 6 updates
a99fd16 
Bumps the python-packages group with 6 updates:

| Package | From | To |
| --- | --- | --- |
| [duckdb](https://github.com/duckdb/duckdb-python) | `1.3.2` | `1.4.0` |
| [parsl](https://github.com/Parsl/parsl) | `2025.9.8` | `2025.9.22` |
| [pycytominer](https://github.com/cytomining/pycytominer) | `1.2.4` | `1.3.0` |
| [botocore](https://github.com/boto/botocore) | `1.40.30` | `1.40.41` |
| [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.4.7` | `4.4.9` |
| [black](https://github.com/psf/black) | `25.1.0` | `25.9.0` |


Updates `duckdb` from 1.3.2 to 1.4.0
- [Commits](duckdb/duckdb-python@v1.3.2...v1.4.0)

Updates `parsl` from 2025.9.8 to 2025.9.22
- [Commits](Parsl/parsl@2025.09.08...2025.09.22)

Updates `pycytominer` from 1.2.4 to 1.3.0
- [Release notes](https://github.com/cytomining/pycytominer/releases)
- [Changelog](https://github.com/cytomining/pycytominer/blob/main/CHANGELOG.md)
- [Commits](cytomining/pycytominer@v1.2.4...v1.3.0)

Updates `botocore` from 1.40.30 to 1.40.41
- [Commits](boto/botocore@1.40.30...1.40.41)

Updates `jupyterlab` from 4.4.7 to 4.4.9
- [Release notes](https://github.com/jupyterlab/jupyterlab/releases)
- [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md)
- [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.4.7...@jupyterlab/lsp@4.4.9)

Updates `black` from 25.1.0 to 25.9.0
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](psf/black@25.1.0...25.9.0)

---
updated-dependencies:
- dependency-name: duckdb
  dependency-version: 1.4.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: parsl
  dependency-version: 2025.9.22
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: pycytominer
  dependency-version: 1.3.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: botocore
  dependency-version: 1.40.41
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: jupyterlab
  dependency-version: 4.4.9
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: black
  dependency-version: 25.9.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot force-pushed the dependabot/pip/python-packages-1df9c69f1c branch from f6061b4 to a99fd16 Compare September 30, 2025 18:39
d33bs
d33bs approved these changes Sep 30, 2025
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@dependabot squash and merge

@dependabot dependabot bot merged commit 2f51ec3 into main Sep 30, 2025
12 checks passed
@dependabot dependabot bot deleted the dependabot/pip/python-packages-1df9c69f1c branch September 30, 2025 19:23
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