fix: get_edge_ids() error for 2x2 matrices

.Rbuildignore

@@ -59,11 +59,11 @@
 ^[\.]?air\.toml$
 ^\.vscode$
 ^CLAUDE\.md$
+^covr$
+^src/*\.gcda$
+^src/*\.gcno$
 ^man/dot-igraph.progress\.Rd$
 ^man/dot-igraph.status\.Rd$
 ^man/dot-extract_constructor_and_modifiers\.Rd$
 ^man/dot-apply_modifiers\.Rd$
 ^man/handle_vertex_type_arg\.Rd$
-^covr$
-^src/*\.gcda$
-^src/*\.gcno$

R/interface.R

@@ -483,10 +483,12 @@ el_to_vec <- function(x, call = rlang::caller_env()) {
     nrow <- dimx[[1]]
     ncol <- dimx[[2]]
     if (nrow == 2 && ncol == 2) {
-      lifecycle::deprecate_stop(
+      lifecycle::deprecate_warn(
         "2.1.5",
-        "get_edge_ids(vp = 'is not allowed to be a 2 times 2 matrix')"
+        "get_edge_ids(vp = 'is not allowed to be a 2 times 2 matrix')",
+        details = c("For backward compatibility, it is assumed that each row is an edge, from the first column to the second column.", "convert to a data.frame with two columns and one row per edge.")
       )
+      c(x)
     } else if (nrow == 2) {
       lifecycle::deprecate_warn(
         "2.1.5",

revdep/README.md

@@ -1,23 +1,21 @@
 # Revdeps
 
-## Failed to check (5)
+## Failed to check (4)
 
 |package   |version |error |warning |note |
 |:---------|:-------|:-----|:-------|:----|
 |bnlearn   |5.0.2   |1     |        |     |
 |datapack  |1.4.1   |1     |        |     |
-|multinma  |0.8.1   |1     |        |     |
 |RSP       |0.4     |1     |        |     |
 |streamDAG |?       |      |        |     |
 
-## New problems (32)
+## New problems (30)
 
 |package              |version  |error  |warning |note |
 |:--------------------|:--------|:------|:-------|:----|
 |[AnimalHabitatNetwork](problems.md#animalhabitatnetwork)|0.1.0    |__+1__ |        |     |
 |[CITMIC](problems.md#citmic)|0.1.2    |__+1__ |        |     |
 |[CoDiNA](problems.md#codina)|1.1.2    |__+1__ |        |     |
-|[corpustools](problems.md#corpustools)|0.5.1    |__+1__ |        |2    |
 |[criticalpath](problems.md#criticalpath)|0.2.1    |__+3__ |        |     |
 |[deepdep](problems.md#deepdep)|0.4.3    |__+1__ |        |     |
 |[DiagrammeR](problems.md#diagrammer)|1.0.11   |__+2__ |        |2    |
@@ -36,12 +34,11 @@
 |[manynet](problems.md#manynet)|1.5.1    |__+2__ |        |2    |
 |[miic](problems.md#miic)|2.0.3    |__+1__ |        |1    |
 |[multinet](problems.md#multinet)|4.2.2    |__+1__ |        |1    |
-|[mwcsr](problems.md#mwcsr)|0.1.9    |__+2__ |        |1    |
+|[mwcsr](problems.md#mwcsr)|0.1.9    |__+1__ |        |1    |
 |[purgeR](problems.md#purger)|1.8.2    |__+2__ |        |1    |
 |[remify](problems.md#remify)|3.2.8    |__+1__ |        |1    |
 |[riverconn](problems.md#riverconn)|0.3.31   |__+2__ |        |     |
 |[rsetse](problems.md#rsetse)|0.5.0    |__+2__ |        |     |
-|[SEMID](problems.md#semid)|0.4.1    |__+2__ |        |     |
 |[sharpshootR](problems.md#sharpshootr)|2.3.3    |__+1__ |        |     |
 |[SpaDES.core](problems.md#spadescore)|2.1.0    |__+2__ |        |1    |
 |[tilemaps](problems.md#tilemaps)|0.2.0    |__+2__ |        |1    |

revdep/cran.md

@@ -1,9 +1,9 @@
 ## revdepcheck results
 
-We checked 77 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 36 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 32 new problems
- * We failed to check 5 packages
+ * We saw 30 new problems
+ * We failed to check 4 packages
 
 Issues with CRAN packages are summarised below.
 
@@ -19,9 +19,6 @@ Issues with CRAN packages are summarised below.
 * CoDiNA
   checking examples ... ERROR
 
-* corpustools
-  checking examples ... ERROR
-
 * criticalpath
   checking examples ... ERROR
   checking tests ... ERROR
@@ -86,7 +83,6 @@ Issues with CRAN packages are summarised below.
   checking examples ... ERROR
 
 * mwcsr
-  checking examples ... ERROR
   checking tests ... ERROR
 
 * purgeR
@@ -104,10 +100,6 @@ Issues with CRAN packages are summarised below.
   checking examples ... ERROR
   checking re-building of vignette outputs ... ERROR
 
-* SEMID
-  checking examples ... ERROR
-  checking tests ... ERROR
-
 * sharpshootR
   checking examples ... ERROR
 
@@ -126,6 +118,5 @@ Issues with CRAN packages are summarised below.
 
 * bnlearn   (NA)
 * datapack  (NA)
-* multinma  (NA)
 * RSP       (NA)
 * streamDAG (NA)