Use uint16_codec argument
#12971
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Use uint16_codec argument
#12971
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cbrnr
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agramfort,
dengemann,
drammock and
larsoner
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Thanks @cbrnr ! Bonus points if you want to open a quick (?) PR to SciPy to try to add this to https://docs.scipy.org/doc/scipy/reference/generated/scipy.io.loadmat.html as well |
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Sure, I can do that (I think just adding the parameter to the docstring section should be sufficient). |
larsoner
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Dec 6, 2024
* upstream/main: (736 commits) ENH: Add round-trip channel name saving (mne-tools#13003) update governance (mne-tools#12896) pin selenium and stop filtering its warning (mne-tools#13000) DOC: fix return value doc of inst.get_montage() (mne-tools#12995) remove some ._filenames uses in favor of .filenames (mne-tools#12996) use eegbci.standardize instead of custom code (mne-tools#12997) Bump autofix-ci/action from dd55f44df8f7cdb7a6bf74c78677eb8acd40cd0a to ff86a557419858bb967097bfc916833f5647fa8c in the actions group (mne-tools#12999) MAINT: Update code credit (mne-tools#12998) MAINT: Unpin VTK (mne-tools#12991) [pre-commit.ci] pre-commit autoupdate (mne-tools#12988) Fix: update cnt.py to check missing annotation (mne-tools#12986) do not log about using set_montage AGAIN if it has never been used (mne-tools#12984) DOC: fix numpy docstr example Vectorizer() (mne-tools#12983) Changed epochs_clean_sub = model_plain.apply(epochs) to epochs_clean_sub = model_sub.apply(epochs), making use of the regression coefficients from model_sub. mne-tools#12977 (mne-tools#12978) DOC: add meegkit to related software suite (mne-tools#12976) DOC: specify tmax_raw param may be None, and what it means (mne-tools#12972) [pre-commit.ci] pre-commit autoupdate (mne-tools#12975) DOC: fix note in legacy pick_channels func (mne-tools#12973) Use `uint16_codec` argument (mne-tools#12971) Bump codecov/codecov-action from 4 to 5 in the actions group (mne-tools#12970) ...
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The
uint16_codecargument formne.io.read_raw_eeglab()is only used if the optional dependencypymatreaderis installed. This PR adds support for this argument for the case whenpymatreaderis not installed and hence the base implementation viascipy.io.loadmat()is used.Note that
uint16_codecis an undocumented parameter ofscipy.io.loadmat()(which is also used bypymatreader). However, since it seems to work in practice, I guess adding it should be fine.This issue was originally reported in our forum here.