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Co-authored-by: GregJohnson <YoungKrug@users.noreply.github.com>
* Add cpp function for removing dups * Renamed main source file and added to build ignore
* Using the if(NA) works, but we need to remove NA's before they get to the cpp side * adding nomatch to the data.table join function has appeared to fix the bug #43 * Removing unneeded data. * Fix for unique_compound test
… function. Also added a test for it.
* Testing a solution by taking the percentage of features that passed the CV filter. Checking to see if this removes noise without remain high quality features. * Small fix for new cv filter method * Adding a new method for the cv filter * Cleaning up test and code for new cv filter * Fixing lintr * Optimizing the new cv filter function. Everything is linted and test return the proper results. * Fixed test, vignette and functions to reflect the cv filter changes!
… `import_data()` function. Also modified test.
* Fixing typos and starting to implement a new recursive method for mpactr * Added a function for permutations and started creating a function that recursively goes back to to other features to check if they pass a secondary check. * Can create a CV table, but the table is required to be sorted, need to find a better solution * recursive method for peaking peaks work properly and speed up the traditional version using c++. * New peak filter method for cv filter. Will now check if other permutations of failed peaks pass the cv filter. * Removing browser statements and renaming PeakTable.cpp to CvFilter.cpp * Fixing typos * Removing the fix peak method from mpactr. * Fixed a group and sample code mismatch error in mpactr! * Changed "CV" to "cv" in the GetCvTable() function. * Fixing lintr * Modifying the news.md to reflect changes and fixing the ggplot2 plot issue via #50 * Increment version number to 0.3.0 * Adding docs to build ignore and fixing line endings in makevars (make file)
…e not previously implemented.
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Fix for the valgrind/address sanitize issue on cran!