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    22 repositories

    • plasmids

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 4, 2026Jan 4, 2026

    • protocols

      Public
      Collected GallowayLab protocols
      Python
      •
      Other
      •0•0•49•0•Updated Dec 20, 2025Dec 20, 2025

    • rushd

      Public
      Package for maintaining robust, reproducible data management
      Python
      •
      MIT License
      •0•0•14•0•Updated Dec 1, 2025Dec 1, 2025

    • spectrum-protect-container

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • labbot

      Public
      Python
      •
      MIT License
      •0•0•7•1•Updated Nov 20, 2025Nov 20, 2025

    • idr

      Public
      IDR
      Python
      •
      GNU General Public License v2.0
      •46•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • Kabaria_Promoter_Editing_DIAL

      Public
      Data analysis and modeling code for Kabaria et al "Programmable Promoter Editing for Precise Control of Transgene Expression" (2025)
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 2, 2025Sep 2, 2025

    • article-MAPK-chemogenetic-tuning

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • snakepipes

      Public
      Customizable workflows based on snakemake and python for the analysis of NGS data
      Python
      •
      MIT License
      •89•0•0•0•Updated May 28, 2025May 28, 2025

    • CellBaum

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 28, 2025May 28, 2025

    • ComMAND

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • article-high-resolution-profiling

      Public
      Code for producing figures in indicated article
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • article-engraftable-neurons

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • article-prolif-TF-levels

      Public
      Code and data for proliferation history and TF levels drive direct conversion to motor neurons
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • example-training

      Public
      Sample repository for training
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • cold_backups

      Public
      Python
      •0•0•0•0•Updated Jan 31, 2023Jan 31, 2023

    • tangles_model

      Public
      Code for simulating user-defined gene circuits under the influence of supercoiling-mediated feedback
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 7, 2022Sep 7, 2022

    • kfm

      Public
      Keyence file manager
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 18, 2022Jan 18, 2022

    • zstacker

      Public
      Utility function to convert z-stack of images into an OpenVDB file format
      C++
      •
      MIT License
      •2•3•3•0•Updated Feb 4, 2021Feb 4, 2021

    • synbio_reprogram_review_figs

      Public
      Figures for "Engineering cell fate: Applying synthetic biology to cellular reprogramming", https://doi.org/10.1016/j.coisb.2020.09.002
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Dec 31, 2020Dec 31, 2020

    • cds_review_figures

      Public
      Nuclear architecture figures
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • ORCA-public

      Public
      Fork of the Boettiger lab ORCA code
      MATLAB
      •8•0•0•0•Updated Apr 28, 2020Apr 28, 2020