Remove KF References - Remove all code referencing the profile `kf`

[joneubank]

Summary of request

The kf profile introduced a small list of alternate classes that are only used for the KF Client/Server. Score will no longer directly support kf so this profile is being removed. Consequently, we want to remove all the alternate classes that are only used with the kf profile.

This will additionally let us remove all references to the kf profile throughout the code base.

Details

• manifest/kf
  • Handled by Remove ICGC References - Provide only a single Manifest Service #424
• storage/kf
  • Handled by Remove KF References - Remove directory from score-client/storage/kf #458 and Remove KF profile from score-client/storage/ScoreStorageService #460
• metadata/kf/KFMetadataService
  • Remove metadata/kf directory
  • Remove "!kf" Profile annotation from LegacyMetadataService

    score/score-client/src/main/java/bio/overture/score/client/metadata/legacy/LegacyMetadataService.java

    Lines 31 to 32 in f931ebe

    	@Profile("!kf")
    	public class LegacyMetadataService implements MetadataService {

• Remove "!kf" from CLI Commands
  • MountCommand

    score/score-client/src/main/java/bio/overture/score/client/command/MountCommand.java

    Lines 70 to 71 in f931ebe

    	@Profile("!kf")
    	public class MountCommand extends RepositoryAccessCommand {

  • UploadCommand

    score/score-client/src/main/java/bio/overture/score/client/command/UploadCommand.java

    Lines 47 to 48 in f931ebe

    	@Profile("!kf")
    	public class UploadCommand extends RepositoryAccessCommand {

  • ViewCommand

    score/score-client/src/main/java/bio/overture/score/client/command/ViewCommand.java

    Lines 68 to 69 in f931ebe

    	@Profile("!kf")
    	public class ViewCommand extends RepositoryAccessCommand {

• Remove all kf config from the application.yml
  • kf and kfportal properties in common profile:

    score/score-client/src/main/resources/application.yml

    Lines 39 to 48 in f931ebe

    	kfportal:
    	url: https://arranger.kids-first.io/june_13/graphql
    	kf:
    	token:
    	url: https://v2i1r42t6d.execute-api.us-east-1.amazonaws.com/beta/token
    	download:
    	url: https://data.kidsfirstdrc.org
    	partSize: 1073741824
    	expiration: 86400

  • kf active profile config

    score/score-client/src/main/resources/application.yml

    Lines 85 to 103 in f931ebe

    	###############################################################################
    	# Profile - "kf"
    	###############################################################################
    	spring:
    	config:
    	activate:
    	on-profile: kf
    	# Storage server
    	storage:
    	url: https://kf.com
    	client:
    	ssl:
    	custom: false
    	---

• Remove all kf config from the test application.yml
  • Same code blocks as in the main application.yml

Additional Context

All references to this profile live in the Score Client. I believe this is a consequence of integrating the Score CLI with a custom backend (not Score Server) during the KF project. These projects are therefore disconnected and this integration can't be maintained within the main Score repo. If the current state needs to be persisted, it should be forked from Score version 5.11.0