feat: add biopython 1.87 to scientific-slim runenv#66
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PaulNewling merged 1 commit intomainfrom May 4, 2026
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Lets sequence-properties (and similar blocks) drop per-block biopython bundling and rely on the shared scientific-slim runenv.
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This pull request adds biopython version 1.87 to the scientific-slim Python 3.12.10 run environment. The changes include updating the dependency list in config.json, the package description in package.json, and adding a changeset file to document the minor version update. I have no feedback to provide.
vadimpiven
approved these changes
May 4, 2026
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Summary
biopython==1.87topython-3.12.10-scientific-slim/config.json.minorchangeset for@platforma-open/milaboratories.runenv-python-3.12.10-scientific-slim.Why
The
sequence-propertiesblock currently bundles biopython per-block via pip +requirements.txt. Promoting biopython into the shared scientific-slim runenv lets that block (and future ones) drop the per-block bundle and pull biopython from the shared environment instead.biopython==1.87matches the version already pinned inblocks/sequence-properties/software/uv.lock.Notes
package.json— changesets handle that on merge.checker/whitelists/python-3.12.10-scientific-slim/added. Builder treats a missing whitelist as non-fatal (builder/src/build.ts:478-482); biopython 1.87 on cpython 3.12 has a small native footprint and is expected to import cleanly across all five platforms. If CI flags an import on some platform, the checker emits a snippet to copy in.