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feat: add biopython 1.87 to scientific-slim runenv #66

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Merged
PaulNewling merged 1 commit into from
May 4, 2026
+8 −2
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feat: add biopython 1.87 to scientific-slim runenv #66

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5 changes: 5 additions & 0 deletions .changeset/scientific-slim-add-biopython.md
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---
'@platforma-open/milaboratories.runenv-python-3.12.10-scientific-slim': minor
---

Add biopython 1.87 to the scientific-slim runenv. Enables blocks like sequence-properties to drop their per-block biopython bundling and rely on the shared runenv.
3 changes: 2 additions & 1 deletion python-3.12.10-scientific-slim/config.json
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"polars-lts-cpu==1.33.1",
"numpy==2.2.6",
"scipy==1.15.3",
"pyarrow==21.0.0"
"pyarrow==21.0.0",
"biopython==1.87"
],
"skip": {},
"platformSpecific": {}
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2 changes: 1 addition & 1 deletion python-3.12.10-scientific-slim/package.json
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{
"name": "@platforma-open/milaboratories.runenv-python-3.12.10-scientific-slim",
"version": "1.0.1",
"description": "Python 3.12.10 run environment bundling polars-lts-cpu, numpy, scipy, and pyarrow for scientific/tabular workloads",
"description": "Python 3.12.10 run environment bundling polars-lts-cpu, numpy, scipy, pyarrow, and biopython for scientific/tabular workloads",
"scripts": {
"cleanup": "rm -rf ./pkg-*.tgz ./pydist ./dist/ ./build/",
"reset": "pnpm run cleanup && rm -rf ./node_modules ./.turbo",
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